Tripterygium wilfordii (thunder duke vine): 120000234
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Entry
120000234 CDS
T07256
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
120000234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120000234
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
120000234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-C2H2_10
V-ATPase_G
Motif
Other DBs
NCBI-GeneID:
120000234
NCBI-ProteinID:
XP_038704123
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All DBs
Position
6:complement(10814483..10826670)
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AA seq
944 aa
AA seq
DB search
MGVPAFYRWLSDRYPLSISDVVEDEPREESSGVLIPVDVTRPNPNGFEFDNLYLDMNGII
HPCFHPEGRPAPVTYDDVFKSIFDYIDHLFSLVRPRKLLFMAIDGVAPRAKMNQQRTRRF
RAAKDAAEAEAEEERLRKEFEEEGTNLLPKQKTETSDSNVITPGTQFMAVLSVALQYLIQ
TRLNHSPGWQYTKVILSDANVPGEGEHKIMSYIRLQRNLPGFNPNTRHCLYGLDADLIML
ALATHEVHFSILREVITPPGQQEKCFYCGQVGHLAADCRGKLEDYGEDLNAIDAPPIYKK
KYQFLNIWVLREYLQYDLDIPNPPVLIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGA
INLLMHIYRREFASMGGYLTDAGEVMLDRVEHFVQSVAVNEDQIFQKRTRIQQSWENNEE
MRTKARRESSEEPQAPVTDKVKLGEPGYKERYYAEKFETSNPEEIDRVRKDVVLKYVEGL
CWVCRYYYQGVCSWQWFYPYHYAPFASDIKDLDDVEITFFLGEPFKPFDQLMGTLPAASS
SALPETYRKLMTDPSSRVHKFYPSEFDIDMNGKRFAWQGVAKLPFIEERKLLAVTKKLED
TLTEEERVRNSVMLDLLYVNPMHPLAAEILSYYQLYYQLPPHERDAWKINPNISGGMNGC
LWLCERNAYRNVVPSPVNGLPDLEYNQVLNVTYLNPRNHRHIPEPPSGVIMPEKVLRPID
IKPFPALWHEDNGGRRQQGRERPQVTGGMALPLLGDAAHRLVRNSLGVKTKSTSNGIPAQ
PPYHNNTSNYVVNRPRPAGPSGYERGPNSSYYANPQSITSSRYPYSSSSPLDNRRNFRAQ
DRLQYQDQYRDLRTEISALTVECLRSRAPAAMPPRMPHSGHLPNIQQPFAQDIGPLPSPP
AKWINKATSGSASSSGAYEKQVKKVYQVKTQVPQEASSDRYPVN
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccggcgttctacaggtggctatctgaccgttacccgctgtcgatctctgat
gtggtcgaagacgagcccagagaggaatccagtggcgtgcttataccggttgacgtcact
agaccaaaccctaacgggtttgaattcgataatctctacctcgacatgaacggtatcatc
cacccttgcttccatcctgaagggaggcctgctcctgtcacttatgatgatgtattcaaa
tcaatatttgattatattgaccatctgttctctttagttcgcccaagaaagcttcttttc
atggcaattgatggagttgcccctagagctaaaatgaatcagcaacgaacacgacgcttt
agagctgcaaaagatgctgctgaggctgaagctgaagaagaaagattgaggaaagaattt
gaagaagaagggacaaacttgcttcctaaacagaaaactgaaacatctgattctaatgtg
atcactcctggcacacagtttatggcagtgctttcagttgcacttcaatatcttatacaa
actaggttgaaccacagtccaggctggcagtacacaaaggttatcctttctgatgcaaac
gttcctggtgagggagaacacaaaattatgtcatacataagattacaacgtaatcttcct
ggttttaatccaaacactagacattgtctctatggcctggatgcagatttgattatgttg
gctttagcaacacacgaggtccacttttcaatattgagagaggtcattacgcctcctggg
caacaggaaaaatgcttttactgtggtcaagtgggtcatctcgcagccgattgtcgtggt
aagctggaagactatggtgaagatttgaatgccatagatgctcctcctatatataagaag
aaatatcagttccttaacatctgggtgttgcgggaatatttacaatatgatttggatatc
cctaatcccccagttctcatcgactttgagcgaatagtggatgattttgtgtttctatgt
ttctttgttggtaatgacttccttccacatatgccaacactggaaatcagagagggtgcc
ataaatttactgatgcatatctatagaagggaatttgcttccatgggtggctatcttaca
gatgcgggtgaggttatgttagacagagtagagcattttgtgcagtctgtcgctgttaat
gaagatcaaatctttcagaagaggactcgtatacagcagtcttgggaaaataatgaagaa
atgagaacgaaggcgagaagggagtcctctgaagagccacaggcaccagtcactgacaag
gtcaaactaggggagcctggttacaaagaaaggtattatgctgagaaatttgagacatca
aatcctgaggagattgatagagttagaaaagatgtggtgttgaaatatgttgaaggttta
tgctgggtgtgccgctactactaccaaggtgtttgttcttggcaatggttttacccgtat
cattatgctccattcgcttcagatattaaagatctagatgatgtcgaaataacatttttt
cttggagagccatttaaaccattcgatcagcttatgggaaccctaccagctgcaagttct
agtgctttgccagaaacatacagaaaattgatgactgatccatcatcgcgggttcataaa
ttttatccttctgagtttgacattgacatgaatggaaaacgctttgcttggcagggtgta
gccaaattgcctttcatcgaggaaaggaagttgcttgctgtaacaaagaagcttgaggac
actttaacggaggaagagcgggttcggaatagtgtgatgcttgacttgttgtacgtcaat
ccaatgcatcctttggctgcagaaattctctcttactatcagctttactatcaattaccg
ccacatgaaagagatgcttggaaaatcaacccgaatattagtggtggaatgaatggttgt
ctttggttgtgtgaacgcaatgcatatagaaatgtcgtgccttctcctgtcaatggattg
ccggacttggagtacaaccaagttttaaacgttacgtacctcaatcctagaaatcacaga
cacattccagaacctcccagtggtgtcatcatgcctgaaaaggtgctaagacccatagac
ataaaaccattccctgcattatggcatgaagataatggtggccgacgccagcaaggtaga
gaaaggccacaagtaactggaggtatggctctcccactattgggggatgctgctcatcgt
ctggttaggaattcactcggtgtaaaaaccaagagtacatctaatggaattccagcacaa
ccaccataccataataacacatccaactatgtggtcaacagacctagaccggctggaccc
tctgggtatgaaaggggcccaaattcttcttattatgctaaccctcagagcatcactagc
tctagatatccttactcatcgagtagcccgctagacaacagacgtaactttcgggcacag
gatagattacaataccaagatcaatatcgtgacttgaggactgagatatctgctttgacg
gtagaatgtctcagaagcagggcacctgctgcgatgcccccaaggatgcctcattccgga
cacttaccaaacatacagcagccgtttgcacaggacattggtccacttccatcaccgcct
gccaaatggatcaacaaagcaactagtggcagtgcctcgtcaagtggagcttatgagaaa
caagtgaagaaggtttatcaagtcaagacacaggtaccccaagaagccagcagtgaccgt
tacccggtaaattga
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