Thiomicrorhabdus xiamenensis: HQN79_06090
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Entry
HQN79_06090 CDS
T07160
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
txa
Thiomicrorhabdus xiamenensis
Pathway
txa03030
DNA replication
txa03410
Base excision repair
txa03420
Nucleotide excision repair
txa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
txa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HQN79_06090 (ligA)
03410 Base excision repair
HQN79_06090 (ligA)
03420 Nucleotide excision repair
HQN79_06090 (ligA)
03430 Mismatch repair
HQN79_06090 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
txa03032
]
HQN79_06090 (ligA)
03400 DNA repair and recombination proteins [BR:
txa03400
]
HQN79_06090 (ligA)
Enzymes [BR:
txa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HQN79_06090 (ligA)
DNA replication proteins [BR:
txa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HQN79_06090 (ligA)
DNA repair and recombination proteins [BR:
txa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HQN79_06090 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HQN79_06090 (ligA)
MMR (mismatch excision repair)
DNA ligase
HQN79_06090 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HQN79_06090 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
QKI89165
UniProt:
A0A7D4T101
LinkDB
All DBs
Position
1329153..1331183
Genome browser
AA seq
676 aa
AA seq
DB search
MSNPLKTEHQKLCKELNYHNYQYYVLDDPQVSDAEYDALYQKLLKLEKQHPELITSESPS
QRVGDAPIESFQSVKHAVPMFSLDNAFSQEDLQDFERRIQDRLKIPSEQIDYIAEPKMDG
LAINIRYENGCLKQATTRGDGVTGEDVTHNIRTLHSVPLQLLGDDWPQTLEVRGEVFISK
KDFAQINEHQMAKGDKAFANPRNAAAGTLRQLDPRIAAQRKLSFFLYGWGEISHDWPQPD
TYSETLQQFRVWGLPTNPETQLVIGAAGMGDYYQRLVEKRDSLDYEIDGIVYKVNQINWY
ERLGFTAKAPRWAIARKFPAQEKWTDLLGIDIQVGRTGALTPVARLQPVEVGGVVVSNAT
LHNLDEIRRKDVRVGDKVIVRRAGDVIPEIVGPVLSFRKQELPLFNMPSSCPECGSEVVK
DGDKAVHRCSGGLFCPAQRKRALQHYVSRKAMDIVGLGDKLIDQLCDLELVKHPDDLYKL
DVETLAGLERMAQKSAQKVIDAINASKNTTLPRFIFALGIPEVGEVTARNLANHFKSLPA
IESAEEEMLLAVDDIGEIVAKQIKHFFAQPHNLEVIGGLLAAGIHWPEIEIAEQPADSPF
AGKTVVLTGSLQQGSRTEAAAKLEALGAKVTSSVSAKTDFLVAGEKAGSKLTKAEQLGVT
ILNEQQFTELMESSHG
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatccattaaagactgaacatcaaaaactctgtaaagagttgaattatcacaat
taccagtactatgttctcgatgaccctcaagtgagtgatgccgagtatgatgctttgtat
caaaagttgctgaagcttgaaaaacagcacccggaactgattacttccgagtctccaagc
cagcgagttggagatgctccgattgaaagtttccagtctgtcaaacatgccgtaccgatg
ttttctcttgataacgctttcagtcaggaagatctgcaggatttcgagcgccgaattcag
gatcgcctgaaaatcccttctgaacagatagactatattgccgaaccgaaaatggatggt
ctggcaattaatatccgttatgaaaacggctgtcttaagcaagcgactacacgaggggat
ggtgttaccggcgaagacgtaacacacaatattcgcacattgcattcggttcctctgcag
ctgttaggcgatgactggccacaaacacttgaggtacgcggagaagtttttatcagcaaa
aaagattttgcgcagataaatgaacatcagatggctaaaggggataaagcgtttgccaac
ccgagaaacgcggccgccggaaccctccgccaactcgatccgcgtattgccgcacaacgt
aaactgagtttctttttgtatggttggggtgagatcagccatgattggccgcagccggac
acctattctgaaactctgcagcaattcagagtctggggactgccgaccaatccggaaacg
cagttagtgatcggtgccgcaggaatgggcgactattatcagcgcctggttgaaaagcgg
gattcgctcgactatgaaattgacggcattgtttacaaggtcaaccagatcaactggtat
gaacgtcttggatttaccgccaaggcgcctcgttgggcgatagcacgcaaatttcccgct
caggaaaagtggacggatctgttggggatcgatattcaagtcgggcgcaccggcgcttta
accccggtagccagactgcagccggtcgaagttggcggtgtcgttgtctccaatgccact
ctgcacaatttggacgaaatccgtcgtaaagacgttcgtgtcggcgacaaggtgatcgta
cgccgagccggagatgttattccggaaattgtcggtccggtactttccttccgcaagcag
gagttgccgctgttcaatatgccgagttcgtgtccagagtgcggttcagaagtggttaag
gacggcgacaaagccgtgcatcgctgctctggagggcttttctgtccggcacagcgtaaa
cgagcgctgcaacattatgtgtcgcgcaaagcgatggatatcgtcgggttgggtgataag
ttaatcgaccagctgtgcgatctcgaattggtaaaacacccggatgatctctataaactg
gatgtagagacattggccggtctggaaagaatggcacaaaaatccgcccaaaaagtcatt
gatgcgatcaatgcatcgaaaaacaccaccttgccacgctttatctttgctcttggcatt
cccgaggtcggtgaggttacggcacgaaacctggcaaatcacttcaaatcactaccggca
attgaatccgcagaagaggaaatgttactggcagtagatgatattggtgagattgtcgct
aaacagattaaacacttctttgcccagccgcataatctggaagtgatcggcggtttactt
gccgctggcattcactggccggaaatcgagatcgccgagcaacctgcagattcaccgttt
gccgggaaaaccgtcgttttgaccggctccttacagcagggatctcgaactgaggccgca
gcaaaactcgaagctttgggcgccaaagtcacctcaagcgtttcagctaaaaccgatttc
cttgttgccggtgaaaaagcgggatcaaaattaaccaaagcggagcagctgggcgtgact
attttaaacgaacaacaatttaccgaactgatggagtcaagccatggttag
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integrated database retrieval system
