Thermoanaerobacterium xylanolyticum: Thexy_0731
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Entry
Thexy_0731 CDS
T01505
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
txy
Thermoanaerobacterium xylanolyticum
Pathway
txy03030
DNA replication
txy03410
Base excision repair
txy03420
Nucleotide excision repair
txy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
txy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Thexy_0731
03410 Base excision repair
Thexy_0731
03420 Nucleotide excision repair
Thexy_0731
03430 Mismatch repair
Thexy_0731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
txy03032
]
Thexy_0731
03400 DNA repair and recombination proteins [BR:
txy03400
]
Thexy_0731
Enzymes [BR:
txy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Thexy_0731
DNA replication proteins [BR:
txy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Thexy_0731
DNA repair and recombination proteins [BR:
txy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Thexy_0731
NER (nucleotide excision repair)
GGR (global genome repair) factors
Thexy_0731
MMR (mismatch excision repair)
DNA ligase
Thexy_0731
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Thexy_0731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
RNA_ligase
HHH_8
HHH_3
RNA_pol_A_CTD
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AEF16778
UniProt:
F6BIN4
LinkDB
All DBs
Position
772178..774157
Genome browser
AA seq
659 aa
AA seq
DB search
MAIEDRIKELRDKLNHHSYMYYVLDKPEISDYEYDMMMRELIELEEKYPQFKTPDSPTQR
VGGEPLKEFEPFTHVVPMQSLANAFSEGELRDFDRRVRASVGDVEYVVEFKIDGLSVELI
YENGFFTVGSTRGDGIIGENVTNNLKTIKSIPLRLKDDLNLIVRGEVFMPKASFEKLNEE
RELNGESLFANPRNAAAGSLRQLNPKITAKRDLDIFVFNLQRIDGIELKTHAEALEFLKY
QGFKVSPHIKVCGNIDEVIEDINYIRDIRDSLSYETDGAVVKVNDLEKREILGSTAKDPR
WAIAFKYPTERQKTKVKDIVVQVGRTGALTPTAILEPVKIAGSIVSRATLHNEDYIKEKD
IRIGDTVIIQKAGEIIPEVVSVVAEERDGSEKFFIMPEVCPECGAATVRLPGESVTKCTG
LNCPAKLKRGIIHFASKDAMDIDGLGPAVIGQLLDNHLIHNISDLYYLKYDDLVKLDRMG
DKSAKNLINAIEESKGRDLDRLIFGLGIDLIGSKAAGILASHFKTMESLEKATFEELTEI
EEIGPKMADSVVAFFKEKQNLDIIDRLKAAGVNMRKKDAINVNDNFKGLTFVLTGTLEKY
TRDEAKRLIEERGGKVTGSVSKKTDYVVVGADPGSKLSKAQELGVKILNEEQFENMLKQ
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggcgatagaagacaggataaaagaattgagagataagcttaatcatcacagctacatg
tactatgtactggacaagcctgaaatatctgactatgagtatgatatgatgatgagagag
ctcattgagttagaagaaaagtaccctcagtttaagacgcctgattcaccgactcaaagg
gttggcggtgaacctttgaaagagtttgaaccatttacacatgtagtgccgatgcaaagt
ttggcaaatgctttttctgaaggcgagcttagagattttgacaggagagtaagagcatct
gtcggtgatgtagaatacgtagtagagtttaaaattgacggtttatctgtggagcttata
tatgaaaatggcttttttaccgtcggctccacgagaggtgacggaattataggtgaaaat
gtgacaaacaatctaaaaaccattaaatcaattcctttaagacttaaagatgatttaaat
ctcatcgtaagaggtgaggtttttatgcctaaggcttcatttgaaaagttaaacgaagaa
agagaattaaacggagaaagcctttttgcaaatccgagaaatgctgctgctggatcactt
aggcaattaaatcctaaaatcacggctaaaagagatctggatattttcgtatttaattta
cagagaatagatggaatagaattaaaaacacatgctgaagcattagaatttttaaaatat
caaggatttaaagtaagtccgcatattaaagtatgtggaaatatagacgaagtcattgaa
gacataaattatataagagacataagggatagtttgtcttatgaaacagatggagcagtt
gtcaaggtaaatgatttagaaaaaagggaaattttggggtctactgcaaaggatcctcgt
tgggcaattgcattcaaatatccaacagaaaggcaaaaaacgaaagtcaaagatatagta
gttcaggttggaaggactggtgcactgacaccaactgccatattagagcctgtgaaaatt
gcaggttccatcgtatcaagagcgacgcttcacaatgaagattacataaaagagaaggat
ataagaattggtgatacggtgataatccaaaaagctggcgaaatcatacctgaagttgta
agtgttgtagcagaagaaagagatggcagcgagaagttttttatcatgccagaagtgtgt
cccgaatgcggtgctgcaacggtgaggcttcccggtgaatctgtgactaagtgcacaggt
ctaaattgtcctgctaagttaaaaagaggcataatacactttgcatctaaagatgctatg
gacatagatggattaggaccagcggtaataggacagcttcttgacaaccatcttatacac
aacatatcagatctgtattatttgaagtacgatgatttggtaaaacttgataggatggga
gataaatcagcaaagaatctcatcaatgctatagaagaaagcaaaggcagagatttagac
agattgatttttgggcttggcattgatctcattggaagcaaagctgccggcattttagcc
agtcatttcaagacgatggaatctcttgagaaagctacttttgaggagcttactgaaata
gaggaaattggccctaagatggcagacagtgtggtggccttttttaaggaaaaacaaaat
ctggatataatagatagattaaaagctgctggtgtaaatatgcgcaagaaggatgcaata
aatgttaatgacaattttaaaggacttacttttgtcttaacaggaacacttgaaaagtat
accagagatgaggctaagaggcttatagaagaaagaggaggaaaagtgacaggttctgtt
agcaaaaaaacagattatgtcgtcgtaggtgcagatccaggttcaaagctttcaaaagca
caagagcttggagtaaagattttaaatgaagaacagtttgaaaacatgctgaaacaatga
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