Thermodesulfovibrio yellowstonii: THEYE_A2000
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Entry
THEYE_A2000 CDS
T00775
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tye
Thermodesulfovibrio yellowstonii
Pathway
tye03030
DNA replication
tye03410
Base excision repair
tye03420
Nucleotide excision repair
tye03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THEYE_A2000 (ligA)
03410 Base excision repair
THEYE_A2000 (ligA)
03420 Nucleotide excision repair
THEYE_A2000 (ligA)
03430 Mismatch repair
THEYE_A2000 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tye03032
]
THEYE_A2000 (ligA)
03400 DNA repair and recombination proteins [BR:
tye03400
]
THEYE_A2000 (ligA)
Enzymes [BR:
tye01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
THEYE_A2000 (ligA)
DNA replication proteins [BR:
tye03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
THEYE_A2000 (ligA)
DNA repair and recombination proteins [BR:
tye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
THEYE_A2000 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
THEYE_A2000 (ligA)
MMR (mismatch excision repair)
DNA ligase
THEYE_A2000 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
THEYE_A2000 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
BRCT_2
PTCB-BRCT
HHH_8
Zn_ribbon_NUD
HHH_3
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
ACI21243
UniProt:
B5YIF8
LinkDB
All DBs
Position
1913129..1915141
Genome browser
AA seq
670 aa
AA seq
DB search
MKQIPEDIKKEIEKLVKELNYHNYRYYVLDSPVISDEEYDMMLRRLKELEEKWGYILPDS
PTQRVGAAPSEKFEKAEHREPMLSLDNAFSIEELRDFDARVKRLLGSSEEVEYTVEPKYD
GLAVELSYKDGLLYKASTRGDGYVGEDITQNIKTIKAIPLRIEGVDKIPEEIDIRGEVYL
NIDEFERINKERIEKGEPVFANPRNAASGSVRQLDPSITASRRLYMSCYGIGYVKGIEFK
SQIEFIEWLKKGRFPVPAYVKLAKGIEEVIEAIKEIEKLRQGYPFETDGAVVKVNSFELQ
RKLGTKTREPRWAIAYKYPAHQGITKLKDILASVGRTGVITPVAVLEPVKIGGVTVSRST
LHNWDEVERKDIRVGDYVIVERAGEVIPHIIGVVKDRRTGEEKEVKIPEHCPVCGSKTVR
EPGEVAVKCINFNCPAQVEERIKHFASRRAMNIEGLGDKTVELLHNKGIIKHFVDLYKLR
QEDIKGLPGFAELSSKKLIEAIAKSKKTTLSRLLYALGISQVGEYASKLLAQHFRKLEDL
YHIKAEKLVQIPQIGEKTAKTIEQFFNNEENLKAIEELKRMGLKVENPEFEEEKKPSPLK
GLTFVITGTLPKPREEVKEMIEKAGGKVSSSVSKNTDYLLVGEDPGSKLAKAQALRVKTL
SYEEFLKMLE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagatacctgaagatataaaaaaagagattgaaaaacttgtcaaagaactcaac
tatcacaactaccgttattacgtgcttgatagcccagtgatatctgatgaagagtatgac
atgatgctaaggagacttaaagagcttgaagaaaaatggggatacatactgccagactca
ccaactcaaagagtaggtgctgcaccatctgaaaaatttgaaaaggctgaacaccgtgaa
ccaatgctttcccttgataatgccttttccatagaagagttaagagattttgatgccaga
gttaaaaggcttcttggaagttcagaggaagtagaatacactgttgagccaaagtatgac
ggcttggctgtggaattatcttacaaggatggacttctttacaaagcatcaaccagaggt
gatggctatgttggtgaggatattactcagaacataaagacaataaaagctatccctttg
agaattgagggagttgacaaaattccagaagagatagatatccgtggggaagtttactta
aacattgatgagtttgaaagaataaacaaagagagaatcgaaaaaggcgagcctgtattt
gccaatccaagaaatgcagcttctggctctgtaagacagcttgacccttcaataacagca
agtagaaggctttatatgtcctgctatggaataggatatgtaaaaggcatagagtttaaa
agtcagatagagtttattgagtggcttaaaaaagggagatttcctgtgcctgcctatgtg
aaacttgcaaaaggcattgaggaggttattgaggcaattaaagagattgaaaaactaagg
caaggctatccctttgaaacagacggggctgttgtaaaggtaaacagttttgaattgcag
cgtaagcttggcacaaaaactcgtgaaccaagatgggcaattgcttataaatatcctgcc
catcaaggaatcacaaagctaaaggacattcttgcaagtgtgggaagaacaggggttata
actcctgttgccgtacttgagcctgtaaaaatcggtggagttacagtttcaagatcaaca
ctgcataactgggatgaggtggaaagaaaagatataagagttggcgattatgtaattgtt
gaaagggctggcgaggtaattccccacataattggagtggttaaagacagaagaacaggc
gaggaaaaagaggtaaaaatacctgaacactgcccagtttgtggttcaaaaacagttaga
gagcccggtgaggtagcagttaaatgcattaactttaactgccctgctcaggttgaagaa
agaattaaacattttgcatcccgcagggcaatgaatattgaaggacttggtgataaaact
gttgagcttttgcacaataaaggaatcataaaacacttcgtagacctttacaaactaagg
caggaagacataaaaggacttcctggttttgcagagctttcctcaaaaaagctaattgag
gcaatagctaaaagtaaaaaaacaactctttcaaggcttctttatgcccttggaataagt
caggtaggagagtatgcctcaaagcttcttgcacaacattttagaaaactggaagattta
taccatataaaggcagaaaagttagtccaaatcccacaaattggagagaaaacagcaaag
actattgaacagtttttcaataacgaagagaatttgaaagcaatagaggaattaaaaagg
atgggacttaaagtggaaaatcctgaatttgaggaagaaaaaaagccctctcctcttaaa
ggattaacttttgtaataacaggaactcttccaaaaccaagagaggaagtcaaggaaatg
atagaaaaagcaggtggcaaggtctcttcatcagtctcaaaaaacacggactatctctta
gttggtgaagaccctggaagcaagcttgcaaaggctcaggcactgagagtaaaaaccctt
tcatacgaagaatttcttaaaatgctggagtga
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