Thiomicrolovo zhangzhouensis: WCX18_04395
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Entry
WCX18_04395 CDS
T11199
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tzh Thiomicrolovo zhangzhouensis
Pathway
tzh03030
DNA replication
tzh03410
Base excision repair
tzh03420
Nucleotide excision repair
tzh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tzh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WCX18_04395 (ligA)
03410 Base excision repair
WCX18_04395 (ligA)
03420 Nucleotide excision repair
WCX18_04395 (ligA)
03430 Mismatch repair
WCX18_04395 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tzh03032
]
WCX18_04395 (ligA)
03400 DNA repair and recombination proteins [BR:
tzh03400
]
WCX18_04395 (ligA)
Enzymes [BR:
tzh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WCX18_04395 (ligA)
DNA replication proteins [BR:
tzh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WCX18_04395 (ligA)
DNA repair and recombination proteins [BR:
tzh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WCX18_04395 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WCX18_04395 (ligA)
MMR (mismatch excision repair)
DNA ligase
WCX18_04395 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WCX18_04395 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
XAU01132
LinkDB
All DBs
Position
865530..867482
Genome browser
AA seq
650 aa
AA seq
DB search
MTAETYRDSVALLNRYAYHYYVLDNPIASDEEYDRLYHDVLSYETAHPEQTLADSPTQRV
GGVALEGFEKAAHRSRMWSLEDIFDAEGLQKWLERVAKLADNVTFYCEPKFDGASLNLIY
EEGRLVQAITRGDGSIGEEVTQNVKTIRSVPLAIDYDGRIEIRGEVVIFKEEFDAINRER
EAQGEALFANPRNAAAGSLRQLDPKITAARNLVFLPYGIGENTLDIPLLSKRMEWIYALG
FRKPPLHRVCTGYDEIEAIYEEMKATRDNFAMMLDGMVIKVDQVEAQEDMGYTVKNPRWS
VAYKFPAVEKMTRVRDVILQVGRSGVVTPVAVVEPVDIEGVVVERATLHNFDEIARKDIH
IGDHVIILRSGDVIPKIIKVIPERRDGTEKALARPTHCPVCGSELLDEGALIKCQNLSCE
ARVVNAIIYFASKQCLNIDGLGDKIVEALFKAGLVKGVIDLYSLSLDALLALDGFKEKKS
QNLLDAIEKSKGTACWRFVNGLGIEHIGEVASKQLCDTFGLDFPDATEEALLAIDGFGGE
MAASVLEFVRVNREQIEALRSVVQPAAPAQKTEAAENPFKGKTVVLTGTMSRPRPEIKND
LEALGAKVAGSVSKKTDYLIYGEDAGSKYDKAVALGVTALTEDAMKQMLQ
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgacggctgaaacctaccgcgacagtgtggcgctgctgaaccgctacgcctaccactat
tatgtcctcgacaaccccattgccagcgacgaagagtacgacagactctaccacgacgtc
ctgtcgtatgaaacggcgcatccggagcagacgttggccgattcgccgacgcagcgggtc
ggaggcgtagcgctggaggggttcgagaaagccgcccaccgcagccgcatgtggagcctg
gaggacatcttcgacgccgagggactgcagaagtggctggagcgggtcgccaaactcgcg
gacaatgttactttctactgcgagccgaagttcgacggggcgagtctcaacctgatctac
gaggagggccggctggtccaggcgattacccgcggcgacggcagcatcggcgaagaggtg
acgcagaatgtcaaaacgatccgcagcgtcccgctcgccatcgactacgacgggcgtatc
gagatccgcggcgaggtcgtcatcttcaaagaggagttcgacgccatcaacagggagcgg
gaggcgcagggcgaagcgctcttcgccaatccccgcaacgccgccgccggcagcctgcgc
cagctcgacccgaagatcaccgcggcgcggaacctcgtcttcctcccctacggtatcggc
gagaacaccctcgacatcccgctgctgagcaagcggatggagtggatctacgccctgggt
ttccgcaagccgccgctgcaccgcgtctgtacgggctacgacgagatcgaggcgatttac
gaggagatgaaagcgacccgggacaatttcgcgatgatgctcgacggcatggtcatcaag
gtcgaccaggtcgaggcccaggaggatatggggtatacggtcaagaacccgcgctggtct
gtggcctacaagtttccggcagtcgagaagatgacccgggtccgtgacgtcatcctgcag
gtagggcgatcgggcgtcgtcaccccggtggccgtcgtcgaacccgtcgacatcgagggg
gtcgtcgtcgaacgcgcgaccctgcacaacttcgacgagatcgcacgcaaagatatccat
atcggcgaccacgtcatcatcctgcgcagcggcgacgtcatcccgaagatcatcaaggtc
attcccgagcgtcgcgacgggacggaaaaggcactggcccgcccgacgcactgcccggtc
tgcggcagcgaactgctggatgaaggggcgctgatcaagtgccagaacctctcgtgtgaa
gcgcgggtcgtcaatgccatcatctactttgcctccaagcagtgcctgaacatcgacggg
ctcggcgacaagatcgttgaagcgctctttaaagccgggctggtcaagggggtgatcgac
ctttacagtctctccctggacgcgttgctggcactcgacgggttcaaagagaagaagagc
cagaacctgctcgacgccatcgaaaagagcaaaggaaccgcgtgttggcgcttcgtgaac
gggttgggaatagagcatatcggggaggtcgcttcgaagcagctctgcgacaccttcggt
ctggattttcccgatgcgacggaggaggcactgctcgccatcgacggtttcggcggggag
atggcggcgtcggtgctggagttcgtccgggtcaaccgggagcagattgaagcgctgcgc
agcgtcgtccagccggcggccccggcgcagaaaaccgaagcggcggagaaccctttcaag
gggaagacggtcgtactcaccggcacgatgagccgcccccggccggagatcaaaaacgac
ctggaagccctgggggcgaaagtcgcgggaagcgtgtcgaaaaagacggattatctcatc
tacggcgaggatgccggcagcaagtacgacaaggcggttgcgctcggtgtgacggcgctt
acggaagatgcgatgaaacagatgctacaatag
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