Ursus americanus (American black bear): 123779338
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Entry
123779338 CDS
T07931
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
uar
Ursus americanus (American black bear)
Pathway
uar03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
uar00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
123779338 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
uar03000
]
123779338 (KDM2B)
04121 Ubiquitin system [BR:
uar04121
]
123779338 (KDM2B)
03036 Chromosome and associated proteins [BR:
uar03036
]
123779338 (KDM2B)
Enzymes [BR:
uar01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
123779338 (KDM2B)
Transcription factors [BR:
uar03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
123779338 (KDM2B)
Ubiquitin system [BR:
uar04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
123779338 (KDM2B)
Chromosome and associated proteins [BR:
uar03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
123779338 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
123779338 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
JHD
Cupin_8
JmjC
Motif
Other DBs
NCBI-GeneID:
123779338
NCBI-ProteinID:
XP_045633287
LinkDB
All DBs
Position
Unknown
AA seq
1314 aa
AA seq
DB search
MEAEKDSGRRLRPIDRQRYDENEDLSDVEEIVSVRGFSLEEKLRSQLYQGDFVHAMEGKD
FNYEYVQREALRVPLIFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEM
SMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKDKQ
TEATNAIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNL
ALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCVTQRSYLTQEYQRESMLI
DAPRKPSIDGFSSDSWLEMEEESCEQQPQEEEKEEEEEEEEEEEEGADKGPKPPADGPPS
PTSTPSEDQEASGKKPKAPAMRFLQRTLSNESEESVKSTTVPTDYPKTPTGSPATGVSAK
WTHLTEFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHADDDPSLAIT
GVPVVTWPKKTPKNRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECG
ECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLML
MECSICNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASN
LPGSLLKEQKMNRDNKEGQEPAKRRSECEEVPRRRSDEHPKKVPPDGILRRKSDDVHLRR
KRKYEKPQELSGRKRASTLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKED
KLFRKKRRSWKNAEDRMALANKPLRRFKQEPEDDLPEAPPKARESDHSRSSSPTAGPSTE
GAEGPEEKKKVKIRRKRRLPTKELSKELSKELNQEIQKTENSLANENHQPIKSEPESESE
EPKRPLGLCERPHRFSKGLTGTPRELRHQLGPGLRSPPRVISRPPPSVSPPKCIQMERHV
IRPPPISPPPDSLPLDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRWCCDKRLW
TRIDLNHCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWI
AVSALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAG
LDITDASLRLIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVT
DQCLSFFKRCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgtccgattgaccgccagagatacgac
gagaacgaggacttgtcggacgtggaggagatcgtcagcgtccgcggcttcagcctggag
gagaagctgcgcagtcagctgtaccagggggacttcgtgcacgccatggagggcaaagat
ttcaactatgagtacgtgcagagagaagctctcagggttcccctgatatttcgagaaaag
gatggactggggattaagatgcctgaccctgatttcacagtccgagatgtcaaactactg
gtgggtagccggcggctggtggacgtgatggatgtgaacacgcagaagggcacggagatg
agcatgtcccagtttgtgcggtactacgagacgcctgaggcccagcgggacaagctgtac
aatgtcatcagcctggagttcagccacaccaagctggagcacctggtcaagcgtccgact
gtggtggatctggtggattgggtggacaacatgtggccccagcatctgaaggacaagcag
acagaagccacgaatgccatcgccgagatgaagtacccgaaagtgaagaagtactgtctg
atgagcgtgaaaggctgtttcactgacttccacatcgactttggaggcacttccgtttgg
taccatgttttccggggtgggaagatcttttggctgattcctccaaccctgcacaatttg
gcactgtacgaggagtgggtgctgtcaggcaaacagagtgacatcttcctgggagaccgc
gtggagcgatgccaaagaattgagctgaaacagggctacacgtttttcatcccttccggt
tggatccatgcagtctacaccccggtagactctctggtgtttggcggaaacatcctgcat
agctttaacgtgcccatgcagctgcggatctacgagattgaggacagaacgcgggtgcag
cccaaatttcgttaccccttctactatgagatgtgctggtatgtcttggaaagatacgtg
tactgtgtgacccagcggtcctacctcactcaggaataccagagagaatcaatgcttatt
gatgcgcctagaaagcccagcatagacggcttctcatctgattcctggctggagatggag
gaggagtcctgtgagcagcagcctcaagaggaggagaaggaggaggaagaagaggaggag
gaagaggaagaggagggtgcagataaggggcccaagccccccgccgatggccctccgtcg
cctaccagcaccccctcagaggaccaggaagcctctgggaagaagcccaaagcacctgcc
atgcggttcctccaaaggactttgtctaatgagtcggaggaaagtgtgaagtccacgacg
gtgcccacagactaccccaagacgcccactggctcccctgccacgggggtctccgccaag
tggacccacctcactgagtttgagctgaagggcctgaaagcgctggtggagaaactggaa
tccctcccagagaacaagaagtgtgtccctgagggcatcgaggacccccaggcactcctg
gagggcgtgaagaatgtcctgaaggagcatgcggatgacgaccccagtctggccatcact
ggggtccctgtagtcacttggccaaagaagactccaaagaaccgggcggtaggtcggccc
aaggggaagctgggcccggcctccgccgtgaagttggccgccaaccggacaacggcggga
gctcgccggcgccggacgcgatgccgcaagtgcgaggcctgcctgcggaccgagtgcgga
gagtgccacttctgcaaggacatgaagaagttcgggggccccgggcggatgaagcagagc
tgcatcatgcggcagtgcatcgcgccagtgctgccccacactgccgtgtgcctggtgtgt
ggcgaggccgggaaggaagacaccgtggaagaggaagaaggaaagtttaacctcatgctc
atggagtgctccatctgcaatgaaatcatccaccctggatgccttaagattaaggagtca
gagggcgtggtcaacgatgagcttccaaactgctgggagtgtccaaagtgtaaccacgcc
ggcaagaccgggaaagcctacaagcaaaagcgtggccctggctttaagtatgcctccaac
ctgcctggctccctgctcaaggagcagaagatgaaccgggacaacaaggaagggcaggag
cctgccaagcggaggagtgagtgtgaggaagtgcctcggcgcaggtcagacgaacacccc
aagaaggtgcccccggacggcatcctgcgccgaaagtcggacgacgtgcacctgaggagg
aagcggaaatacgagaagccccaagagctgagtggacgcaagcgagcctcgacgcttcaa
acgtcccccggttcctcctctcacctctcgccgaggccccctctaggcagcagcctcagc
ccctggtggagatccagtctcacttacttccagcagcagctaaaacctggcaaagaagat
aagcttttcaggaaaaagcggcggtcttggaagaacgccgaggaccggatggctcttgcc
aacaagcctctccgacgcttcaagcaggagccggaggatgacctgcccgaggcgcccccc
aaagcccgggaaagcgaccactcccgctccagctcccctaccgctggacccagcacggag
ggggcagagggccccgaggagaagaaaaaggtaaagatacgcaggaagaggcggcttccc
accaaggagctgagcaaggaactaagcaaggagctgaaccaagagatccagaagacagag
aacagcctggccaacgagaaccaccagcccatcaagtcagagcccgagagtgagagcgag
gagcccaagcggcccctgggcctctgcgagcgcccccaccgcttcagcaaggggctcacc
ggcaccccccgggagctgcggcaccagctggggcctggcctgcgcagcccaccccgtgtc
atctcccggccccctccctctgtgtccccgcccaagtgcatccagatggagcgacacgtg
attcggccaccccccatcagccccccgcctgactcgctgcccctggatgatggggcagcc
cacgtcatgcacagggaggtgtggatggccgtcttcagctacctcagccaccaagacttg
tgtgtctgcatgcgggtctgcaggacctggaaccgctggtgctgcgataagcggttatgg
acccgcatcgacctgaaccactgcaagtccatcacacccctgatgctgagtggcatcatc
cggcggcagcctgtctccctggacctcagctggaccaatatctccaagaaacagctgagc
tggctcatcaaccggttgcctgggctccgagacttggtgctgtcgggctgctcgtggatc
gcggtctcagctctctgtagctctagctgtccgttgctccggaccctggatgtccagtgg
gtagaaggactaaaggatgcccagatgcgggacctcctgtccccacccacagataacagg
ccaggtcagatggacaatcggagcaagctccggaacatcgtggagctgcgtctagcaggc
ctggacatcacggacgcctccctgcggctcatcatacgccacatgcccctgctctccaag
ctccaccttagttactgtaaccacgttaccgaccagtccatcaacctgctcactgctgtg
ggcaccaccacccgagactccttaaccgaaatcaacctatcagactgcaataaggttact
gaccagtgcctgtccttcttcaaacgctgtggaaatatctgtcatattgacctgaggtac
tgcaagcaggttaccaaggaaggctgtgaacagttcatagctgaaatgtctgtgagtgtc
cagtttgggcaagtggaagaaaaactcctgcaaaaactgagttag
DBGET
integrated database retrieval system
