KEGG   Ursus americanus (American black bear): 123780568
Entry
123780568         CDS       T07931                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA dC->dU-editing enzyme APOBEC-3F-like
  KO
K18750  C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
Organism
uar  Ursus americanus (American black bear)
Pathway
uar03250  Viral life cycle - HIV-1
uar05170  Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:uar00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    123780568
 09160 Human Diseases
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    123780568
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:uar03019]
    123780568
Messenger RNA biogenesis [BR:uar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     123780568
SSDB
Motif
Pfam: APOBEC2 NAD2 NAD1 APOBEC_N SNAD4 APOBEC3 APOBEC_C APOBEC4_like APOBEC4 APOBEC1 dCMP_cyt_deam_1 Toxin-deaminase MafB19-deam AID
Other DBs
NCBI-GeneID: 123780568
NCBI-ProteinID: XP_045635495
LinkDB
Position
Unknown
AA seq 696 aa
MDAGREAWDRHLLDEDTFNENFRNDDWPSRTYLCYKVEGPIQGSGVPLGQDKGILRNKGP
EPSCHAECYLLEQIQSWNLDPKLHYGVTCFLSWSPCAKCAQKMARFLQENSHVSLKLFAS
RLYTRQQYDENYKEGLRTLKRAGASIAIMTYREFELCWKTFVLHDQEGSCFQPWPFLHEE
SQKFSEKLQAILQQRRDSAQEEYLHDDVEMPPVKAGPYNKGNPMEWISPKTFFFQFPSLC
YAWGRKFCYLCFQVERGGHPLSDWGVFRNKVHRRAPYHAELCFLSWFRAQNLSPDENYHV
TWFSSWSPCHTCADEVVKFLDQYRNVTLDIFAARLYCFWDPPFQNGLRELQSAGVQLDIM
SFEDYQYCWENFVDHKGMRFQSRNLLRHRDVLATELENILRCSQGGAPQPAQGIWPAMTS
SVGVVGAPPDQRWGCVQLGELTLFLLPSQPSWPTRKEEKVPSLPTPGAQVDPRSWVQKVT
EPGVTXQRMLFASLVFFLLRRTTMNPLPRKVFYHQFGNQKRVPRPYRRRKTYLCYQLRPQ
DGPVTARGCLQNKKKRHAEIRFIDKIRSLQRDSSQTFEITCYVTWSPCFTCAEELVAFVR
DHPHVRLRLFASRLYFHWLRKYQEGLRLLHKSRIPVVIMNLPEFQNCWGEFVDNQDKPFQ
PWNKLETYSENINRRLQRILEPQNDLENDFRNLQLR
NT seq 2091 nt   +upstreamnt  +downstreamnt
atggatgctggcagagaggcctgggacagacacctcctggatgaggacaccttcaacgag
aacttccgcaatgatgattggccctccagaacctacctctgttacaaggtcgagggtccc
attcagggctccggggtccctctgggccaggataagggcatcctgcgcaataagggacct
gagccctcctgccacgcggagtgctacttgctggagcagatccagtcctggaacctggac
ccgaagcttcactatggggtcacctgctttctctcctggagcccctgcgctaagtgtgcc
cagaagatggctcggttcctgcaggagaacagccacgtgagcctgaagctcttcgcctcc
cgcctctatacccgacagcagtatgatgagaattacaaggaggggctgcggaccctgaag
agggctggggccagcatcgccatcatgacctacagggagtttgagctctgctggaaaacc
ttcgtgctccacgaccaggagggaagctgcttccaaccctggccatttctgcatgaggag
agtcagaaattctctgagaaactgcaagccattctccagcaaaggcgagacagtgcccaa
gaggaatacctccatgatgacgtggaaatgccccctgtcaaggctgggccttataataaa
ggaaacccaatggagtggataagtcctaaaaccttcttcttccaattcccaagcctgtgc
tacgcttgggggcggaagttctgctacctgtgcttccaagtggaaagaggggggcacccc
ctgagtgactggggggtctttcgaaacaaggtccatcgccgggctccctaccatgcagaa
ctctgcttcctctcttggttccgtgcccagaatctgtcccctgatgagaattaccatgtc
acctggttctcatcctggagcccctgccacacctgtgcagatgaggtggtcaagttcctg
gaccaatacaggaacgtgaccctggacatcttcgctgcccgcctctactgcttctgggat
ccacccttccagaatgggcttcgcgagcttcagtctgcaggggtccagctggacatcatg
tcctttgaagattatcaatactgttgggaaaactttgtggaccacaaggggatgcgcttc
cagagtcggaatctattaagacatagggatgtgctggccacagagcttgagaatattctt
aggtgttctcagggtggggccccccagccagcccaaggcatctggccagcaatgacctcc
agcgtgggcgtggtgggtgctcccccagaccagaggtggggctgtgtgcagctgggagag
ctcaccctcttccttctcccttcccagccctcctggccaacaaggaaagaggagaaggtc
ccttccctccccaccccaggggcccaagtggacccaaggagttgggttcagaaggtgaca
gagcctggggtgacannccagaggatgctctttgcatctttggttttcttcctcttgcgc
agaaccacgatgaacccactaccacgaaaagtattctaccatcagttcggcaaccagaag
cgggtcccaaggccctaccgccggagaaagacctacttgtgctaccagctgaggccccag
gatggccccgtaactgccagaggctgccttcagaacaagaaaaagcgccatgcagaaatt
cgctttattgacaagatcaggtcactacaacgggactcatcccagacattcgaaatcaca
tgctatgtcacatggagcccctgcttcacctgtgcggaggaactggtggcgtttgtcaga
gaccacccccacgtcagactgcggctctttgcctcccgcctgtatttccactggctgagg
aagtatcaggaggggctgagactattgcacaagtccaggatcccagtggtcatcatgaac
ctcccggagtttcagaactgctggggggagtttgtggacaaccaggacaaaccttttcag
ccctggaacaagctggaaacgtacagtgaaaacataaaccgtcggctccagaggatcctc
gagccccagaatgatttagaaaatgacttcagaaatttgcaacttcgatga

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