Ursus americanus (American black bear): 123781168
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Entry
123781168 CDS
T07931
Symbol
DDX58
Name
(RefSeq) antiviral innate immune response receptor RIG-I isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
uar
Ursus americanus (American black bear)
Pathway
uar04064
NF-kappa B signaling pathway
uar04622
RIG-I-like receptor signaling pathway
uar04623
Cytosolic DNA-sensing pathway
uar05160
Hepatitis C
uar05161
Hepatitis B
uar05162
Measles
uar05164
Influenza A
uar05168
Herpes simplex virus 1 infection
uar05169
Epstein-Barr virus infection
uar05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
uar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
123781168 (DDX58)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
123781168 (DDX58)
04623 Cytosolic DNA-sensing pathway
123781168 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
123781168 (DDX58)
05160 Hepatitis C
123781168 (DDX58)
05171 Coronavirus disease - COVID-19
123781168 (DDX58)
05164 Influenza A
123781168 (DDX58)
05162 Measles
123781168 (DDX58)
05168 Herpes simplex virus 1 infection
123781168 (DDX58)
05169 Epstein-Barr virus infection
123781168 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
uar04054
]
123781168 (DDX58)
Enzymes [BR:
uar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123781168 (DDX58)
Pattern recognition receptors [BR:
uar04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
123781168 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_22
AAA_25
PTS_IIB
Motif
Other DBs
NCBI-GeneID:
123781168
NCBI-ProteinID:
XP_045636521
LinkDB
All DBs
Position
Unknown
AA seq
928 aa
AA seq
DB search
MSAEDRQNLHAFRDYVVKTLDPTYILSYMAPWFKDDEVQHIQAEKNNKGTTEAASLFLKF
LLELQEEGWFRGFLDALGHAGYSGLYEAIETWDFRKIESLEEYRLLLKRLQPEFKTTVNP
KDILPEISGCLISQECEEIIQVCSNKGLMAGAEKMAECLLRSDKENWPKTLKLALEIEES
QFSQLWIVDKDAKNVELKVLEDDEIETSDIQIFYKEEPECPNLSQNPSPPSASPTFTQLK
PRNYQLELALPAKEGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFAIQLPV
YEQQKSVFSKYFEKLGYKVAGVSGATSEIVSVEEIVENNDIIILTPQILVNSLRKGTVPS
LSVFTLMIFDECHNTGKHHPYNMIMFNYLDQKLGGSSDPLPQVIGLTASVGTGDAKNTTE
AMEYICKLCASLDTSVIATVKDNLEELEEIVYKPQKFFRKVKLRTTDRFKCIISQLMRET
ESLAKKIFDELGTVTLENVFQIQNRNFGTQKYEQWILSVQKTCILFQLPDKEEESRICKA
LYLYTSHLRKYNDALIINEHARMKDALDYLKDFFANVRAAGFDEIEQNLTWRFEEKLREL
ESVSMDPGNENPKLQDLSFILQEEYHLNPESRTILFVKTRALVDALKKWIEENSELSFLK
PGILTGRGKTNQNTGMTLPAQKCALDAFRTDGDNKILIATSVADEGIDIAQCNLVILYEY
VGNVIRMIQTRGRGRARGSKCFLLTSNADVIEKEKINIYKEKMMNDSILRLQTWNEAVFK
EKVLQIQIQEKLIRDSQGKVERVPDKENKKLLCRKCKGFACYTADIRVVEDCHYTVVGDD
FRKCYVSKLHPKPKSFGYFEKTAKIFCSRENCSHDWGIHVKYKTFEIPVIKIESFVVEDI
ATGAQKLYAKWRDFLLEKIPFDAAEMSK
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgaggatcggcagaatctgcacgccttccgggactatgtcgtgaagactctg
gaccctacctacatcctgagctacatggccccctggtttaaggacgatgaggtgcagcat
atccaggctgagaaaaacaataagggcacgacggaggccgcctcactttttcttaagttc
ctattggagctccaggaagaaggctggttccgtggctttttggatgcccttggtcacgca
ggttattctggactttatgaagccattgaaacttgggatttccgaaaaattgaaagtcta
gaggagtacagattgcttttaaagcgtttacagccagaatttaaaaccacagttaatcca
aaagatatccttcctgaaatatctggatgtttaattagtcaggaatgtgaagaaatcata
caggtttgttccaacaaggggctgatggcaggtgcggagaaaatggctgaatgccttctc
agatcagacaaggaaaactggcccaaaactttgaaacttgctttggagatagaagagagc
cagttcagtcaactgtggattgtggacaaagatgcaaaaaatgttgaactgaaagttctt
gaggatgatgaaatagaaacttctgacatacagattttctataaggaagaaccagaatgc
ccgaatcttagtcagaacccatctccgccttcagcctctcctactttcacccaactgaag
ccaagaaattaccaacttgagctcgcgttgcctgctaaggaaggaaaaaacacaataata
tgtgctcctactggttgtggaaaaacctttgtttcccttcttatatgtgaacatcatctt
aaaaaatttccacaaggacaaaaagggaaggttgtcttttttgctattcaactcccagtg
tatgaacagcagaaatctgtgttctccaaatattttgaaaagcttgggtacaaagttgca
ggtgtttctggagcaacatctgagattgtctcagtggaagagattgttgagaacaatgac
atcatcattttaactccacagattcttgtgaatagtcttagaaaagggactgttccatca
ctttctgtctttactttgatgatatttgatgaatgtcacaacaccggtaaacaccatcct
tacaatatgatcatgtttaattatctggatcagaaacttggaggatcttcagacccactg
cctcaggtcattgggctgactgcctcggttggcactggggatgccaaaaacacaacagaa
gccatggaatatatctgcaaactgtgtgcttctcttgacacatcggtgatagcaacagtc
aaagacaacttggaagaattggaagaaattgtttataagccccagaagtttttcaggaaa
gtgaaattacggactactgacagatttaaatgcatcatatctcagctgatgagggaaaca
gagagtctggcaaaaaagatctttgacgaactcggtaccgtaactctcgaaaatgtattt
caaattcaaaataggaattttggaacacagaaatacgaacaatggatcctttctgttcag
aaaacatgcattttgtttcagttgcccgacaaagaagaagagagcaggatttgtaaagcc
ctgtatttgtacacttcccacttgcggaaatataatgatgccctcattatcaatgagcat
gcccggatgaaagatgctctggattacttgaaagacttcttcgctaacgtccgagcagca
ggatttgatgagattgagcagaatctcacttggagatttgaagaaaaactgagggaactg
gaaagtgtttccatggatcccggcaacgagaaccctaaactccaagatctctccttcatc
ttgcaagaggagtaccacttaaacccagagagtagaaccatcctctttgtgaaaaccaga
gcacttgtggatgctttgaagaaatggattgaagaaaattctgaactcagctttctaaaa
cctggcatattgactggacgtggcaaaacaaatcagaacacagggatgacgctcccagcg
cagaagtgtgcattggatgcattcagaaccgatggcgataacaagattctgattgccacc
tccgttgctgatgagggcatcgacattgcacagtgtaacttggtcatcctgtatgagtat
gtgggcaatgtcatcagaatgatccaaaccagaggcagaggaagagcaagaggtagcaag
tgcttccttctgaccagcaatgctgatgtaattgaaaaagaaaaaataaacatatacaaa
gaaaaaatgatgaatgactccattttaaggcttcagacgtggaatgaagccgtatttaaa
gaaaaggttctccagatacagattcaagaaaaactcatcagggatagtcaaggaaaagta
gaacgtgtacctgataaggaaaataaaaaactgctctgcagaaagtgcaagggctttgcg
tgttacacagctgacatcagagtggtggaggactgccattacactgtggttggagatgat
tttaggaagtgctatgtgagtaaattacaccccaaaccaaagagctttgggtatttcgag
aagacagcaaagatcttctgttccagagagaactgcagccatgactggggaatccatgtg
aagtacaagacatttgagattccagtgataaaaatagaaagctttgtggtggaagatatt
gctactggagctcagaaactatatgcaaagtggagggactttcttttggagaagataccc
tttgatgctgcagaaatgtccaaatga
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integrated database retrieval system
