Ursus americanus (American black bear): 123782083
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Entry
123782083 CDS
T07931
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
uar
Ursus americanus (American black bear)
Brite
KEGG Orthology (KO) [BR:
uar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
uar03036
]
123782083 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
uar03400
]
123782083 (SMCHD1)
Chromosome and associated proteins [BR:
uar03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
123782083 (SMCHD1)
DNA repair and recombination proteins [BR:
uar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
123782083 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_5th
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_7th
Ig_SMCHD1_6th
Ig_SMCHD1_2nd
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
123782083
NCBI-ProteinID:
XP_045637902
LinkDB
All DBs
Position
Unknown
AA seq
2002 aa
AA seq
DB search
MAAAGGGGPSVGPGEDGGGDGCRTVYLFDRREEESELGDRVLQVEERSDYARFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDDTVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGVRGIQIKLLFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHHLILEEKEKDSFTAVVITGVQQEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGNEKR
TSKEVGPFNNIDIEISMFEKGKAPKIVNLRDIEDDMQTLYINTAADSFEFKAHVEGDGIV
EGIIRYHPFLYDRETYPDDPCFPSKLKEEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTSFKGVITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEIKT
VPIAKLDRTVAEKTVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSNGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLMDPPFRVGVPFNI
PLEFQDEFGHTSQLGNDIQPVFEASGLSLHYEEITKGPNCVIQGVTAKGPVNSCQGKNFN
LKVILPGLKEDTQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNITTQ
PKLIVHCKFSGAPNLPIYVVDCSSSGTSILTGSAIQVQNIKKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREIHI
TSTLADKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIFVIVTDQYGNQIQAFSQSSLSALGIAGIGLDS
SHLKTTFQENTQSISVKGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWP
ELKESIPVINGRELQNPLIVQLCDQWDNPAPVSQVKISLMKANNLKLTPSNQQHKTDERG
RANLGVFSVYAPRGEHMMQVRAIYNKNIIEGPIIKLMILPDPEKPIRLNVKYDKDASFLA
GGIFTDFMITVISEDDSIIKNINPARISMKMWQLSNSGNRPPANAETFSCNKIKDNDKED
GCFYFRDKAIPNKVGTYCIQFGFMMDKANILNSEQIIVDVLPNQPVKLVPKIQPATPAVS
NVRSVASRTLVKDLRLTITDDYNNHTGIDLVGTIVATIKGSKEEDTDTPLFIGKVRALEF
PFVKGSAEITNLVLAENSPGRDSTEYFIIFEPQLPALSRTLEPYILPFMFYNDVKKQQQM
AALTKEKDQLSKNITMYRSLFEASNQLLDEMKCQVEEAKLKEAQLQNELKTHNIDIPTTQ
QMPHIEALLKRKLSEQEELRKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGRLYFKP
IGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLVLGEQIDLLQQYRTSVNKLNSVI
EDLNRQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPAKVEMTDCP
IPPKRMRREASRQNRIITKSDV
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccctcggtggggcccggagaggacggcggaggcgac
ggctgcaggacggtgtacttgtttgaccggcgcgaggaggagtccgagctcggggaccgg
gtgctgcaggtcgaggagcgctcggactacgcaaggttccgcgcctctgtgtgtcagaca
cttggcatttcacctgaagagaaatttgttattacaacaacaagtaggaaagaaattacc
tgtgataattttgatgacactgttaaagatggagtcactctatacctgctacagtcagtc
aatcagttactactaacagctacaaaagaacgaattgacttcctacctcactatgacaca
ctggttaaaagtggcatgtatgaatattatgcaagcgaaggacaaaatcctttgccattt
gctcttgcagaattaattgacaattcattgtctgctacttctagaaacactggtgttaga
ggaatacagatcaaattgctttttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttgtca
aaatttacaagacaaggtgactttgaaagtgatcattcaggatatgttcgtccagtacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaagatgttcat
gaacttgtgctttctaaagaagattttgagaagaaggagaaaaataaagaggcaatatat
agtggatatattagaaacagaaagccatctgattctgttcacattacaaatgatgatgaa
agatttctacatcatcttatcttagaggagaaggaaaaagatagctttactgctgtggtt
atcacaggagtacaacaagaacatatacagtacttgaaaaattatttccttctttggacc
agacagttagcgcatatttatcattactatattcatggcccaaaaggaaatgaaaaacgt
acatcaaaagaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaaggcacctaagattgtcaacctaagggatatagaagatgacatgcagacgttgtat
ataaacacagcagctgatagttttgagttcaaggctcatgttgaaggagatggtatagtg
gaagggattattcgatatcaccctttcttatatgatagagaaacttaccccgatgatcca
tgctttccatcaaaattgaaagaggaagatgatgatgatgattgtttcatacttgagaaa
gcagcaagagggaaaaggcctatttttgaatgtttttggaatggacggctaataccatat
acatctgttgaagactttgactggtgtactcctccaaagaagagagggcttgcaccaatt
gaatgttacaatagaatatctggtgcattattcactaatgacaaattccaggtcagcaca
aataaactgacttttatggatcttgagctaaaattgaaagataagaacaccctttttaca
aggattttaaatggacaggagcagcgaatgaaaattgacagagaatttgccttatggctg
aaggactgccatgaaaagtatgacaaacagataaaatttacatcttttaaaggagtaatt
acacgtcctgatcttccttctaaaaagcagggcccctgggcaacatactcagcaatagaa
tgggatggaaaaatatacaaagcaggacagctggtcaagacaatcaagacacttcctctc
ttctatggaagcatagtaaaattttttctttatggtgatcatgatggagaagtatatgcc
acaggaggagaggttcagattgcaatggaacctcaggcgctgtatgatgaaataaaaact
gtgccaattgcaaagctcgataggacagttgctgagaaaactgtgaaaaaatatgtagaa
gatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagatgaatta
ttgccaaatgagattaggcctgctggaacccccattggtgcattaagaattgaaatactg
aataaaaaaggggaagcaatgcaaaagcttccaggaacaagtcacggagggtcaaagaaa
ctcctggttgagctcaaagttatattacattcttcaaatggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcag
aagttggggaattatacattgaaattacaagttgtattgaatgaaagtaatgcagacact
tatgcaggaagaccactaccatcaaaagcaattaaattttctgttaaagagggtaaacca
gagaaattttcatttggtcttatggatcctccttttcgtgttggagtcccattcaatatc
cctctggagtttcaggatgaatttggtcatactagtcaactaggaaatgatattcagcca
gtttttgaagccagtggtttatctttacattatgaagaaataaccaaaggaccgaattgt
gtgattcaaggggttacagctaagggccctgtaaactcttgtcaaggcaagaattttaat
ttgaaggttattctgccgggtttaaaagaagacacacagattttaaaaattagattactg
ccaggtcctcctcgtcgtttgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtagaagttttggatgaatcagacaatataacaacacaa
ccaaaattgattgttcattgtaagttttcaggtgccccaaaccttccaatctacgttgta
gattgcagcagttctggaaccagtattttaacaggatctgcaattcaagtacagaacatt
aaaaaagaccagactcttaaagcaaaaattgaaatacctagttgtaaagatgtggcaccc
gtggagaagactattaagttgcttcctagtagccatgttgccagattacagatattcagt
gtggaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcaggc
gatattatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaattcatata
acatcgactttagcagataaaattaaagttaattggactcctgagattaacaaagaacac
ttgctacagggtctgcttcctgatgtacaagtaccaacatctgtgaaagatatgcgctat
tgccaggtttcattccaagatgatcatgtgtctttggaaagtgcatttacagtaagacca
cttcctgatgagcctaaacatctaaaatgtgagttaaaaggagggaaaacagtacagatg
ggccaagagcttcaaggagaaatatttgtaatagttacagatcagtatggaaatcagatt
caggcattttcacaaagttctttatctgccttgggaattgctgggattggacttgatagc
tctcatttgaaaactacctttcaggaaaatacacaaagtataagtgtaaaaggcatcaaa
tttattccaggccctcctggaaataaggatctttgttttacttggcgtgaattttctgac
ttcattcgagtgcagctaatttctggaccaccagcaaaacttcttcttatagactggcca
gaattaaaggagtccattccagtgattaatggaagagaactacagaatcctctcattgtt
caactttgtgatcagtgggataatccagcacctgtgtcacaggttaaaataagtctcatg
aaagctaacaatttaaagctcactccttcaaaccaacagcataaaacagatgaaaggggc
agggctaatttgggagtattcagtgtttatgcccctagaggagaacatatgatgcaggtt
agagccatctataacaagaatatcatagagggacctataattaagttaatgattcttcca
gaccctgaaaaacctattcgtctcaatgttaaatatgacaaagatgcttcctttttagca
gggggtattttcactgattttatgattactgttatttctgaagatgacagtatcattaaa
aatattaatccagcacgtatctccatgaaaatgtggcagctgtctaacagtgggaaccga
ccaccagcaaatgcagaaacatttagttgtaataaaataaaagataatgacaaagaagat
ggctgcttctacttcagggataaagcaattcctaacaaagtgggaacatattgtatccag
tttgggtttatgatggataaagcaaatattcttaacagtgaacagattatagttgatgtt
ctgcctaatcagcctgtgaagttagttcctaaaattcagccagctacaccagctgtttca
aatgttcgctcagttgccagtaggactttggtcaaagatttacgtcttactattacggat
gactacaacaatcatactggaattgatttggttggcactatagtagctaccattaaaggt
tctaaggaggaagatacagatacaccactctttatcgggaaagtgagagcactcgaattt
ccctttgtgaaaggatcagctgaaattacgaatctagtgctggcagaaaatagtcctgga
agggatagtactgaatattttattatatttgagcctcagctaccagctctatcgagaaca
ttagaaccatatatcctaccatttatgttttacaatgatgttaagaagcagcaacaaatg
gcagcacttacaaaagaaaaggaccagttatctaagaatattacaatgtatagaagttta
tttgaagccagcaatcagcttcttgatgaaatgaagtgccaagtcgaagaagcaaaatta
aaagaggctcagttgcaaaatgaactaaaaacacataatattgacattcctacaacacag
cagatgccacacattgaagcacttttgaaaagaaagttatcagaacaggaagaactgagg
aaaaaacctagaagatcatgtactcttccaaactatactaaaggcagtggagatgttttg
ggaaagattgcacacctggcacaaattgaagatgatagagctgcaatggttatttcttgg
catctggcaagtgacatggactgtgttgtcaccctgaccactgatgctgcacgtcgtatc
tatgatgaaacccagggtcgtcagcaggtgttgcccctggattctatttataagaagact
cttccagattggaaaagacctctacctcattaccgaaatggaagattgtattttaaaccc
attggagatccagtctttgcccgagatttgttaacatttccagataatgtagaacattgt
gaaacagtatttggtatgctgttaggagacaccattattttggataatttggatgctgcc
aatcattacagaaaagaggttgttaaaattacacactgtcctacactgctcaccagagat
ggagatcgcattcgaagtaacggaaagtttgggggccttcagaataaagctcctccaatg
gataaacttcggggaatggtatttggagctccaataccaaaacagtgcctggtcttaggg
gaacaaatagatcttcttcaacagtatcgtacttctgtgaacaagttgaacagtgtgatc
gaggaccttaaccgtcagttagagtaccttcacactcctgatatgaagaagaaaaaacaa
gaacttgatgaacaagagaaaaatctgaaactaattgagcaaaaactaggtatgactccc
acacgtaagtgtaatgactcattgcgccatccagcaaaggttgaaatgacagattgtcca
attcctcctaaaagaatgagaagagaagcttcaagacaaaataggattataaccaaatca
gatgtgtga
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integrated database retrieval system
