Utexia brackfieldae: RHO15_08140
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Entry
RHO15_08140 CDS
T10516
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ubr Utexia brackfieldae
Pathway
ubr03030
DNA replication
ubr03410
Base excision repair
ubr03420
Nucleotide excision repair
ubr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ubr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RHO15_08140 (ligA)
03410 Base excision repair
RHO15_08140 (ligA)
03420 Nucleotide excision repair
RHO15_08140 (ligA)
03430 Mismatch repair
RHO15_08140 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ubr03032
]
RHO15_08140 (ligA)
03400 DNA repair and recombination proteins [BR:
ubr03400
]
RHO15_08140 (ligA)
Enzymes [BR:
ubr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RHO15_08140 (ligA)
DNA replication proteins [BR:
ubr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RHO15_08140 (ligA)
DNA repair and recombination proteins [BR:
ubr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RHO15_08140 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RHO15_08140 (ligA)
MMR (mismatch excision repair)
DNA ligase
RHO15_08140 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RHO15_08140 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
EPSP_synthase
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WVD63443
LinkDB
All DBs
Position
complement(1815284..1817320)
Genome browser
AA seq
678 aa
AA seq
DB search
MSQKLISIQNTIESLRQKLRYHEYQYHVRDAPEIPDVEYDKLMQELIKLESENPDLITTD
SPTQRVGAAPLSELGNIKHEQPMLSLDNVFDEEGFMAFNKRVTERLGLTEDDEIVFCCEL
KLDGLAVSLLYENGELIQAATRGDGSVGEDITANVRTIKSIPLRLEGDNIPERLEIRGEV
YMTHKGFAKLNHDAEKRGDKLFANPRNAAAGSLRQLDPKVTAKRPLTFYCYGVGIFSGGQ
LPDTHYARLMQFKAWGIPVSDKVQLHSHAQEVIEYYHHIEAQRAALGFDIDGVVIKVNRI
DLQEKLGYVARAPRWATAFKFPAQEQITQLKQVDFQVGRTGAITPVARLVPVQVAGVTVS
NATLHNSDEIDRLGLREGDFVIIRRAGDVIPKVVSVVLEKRSAETKEIHFPTDCPVCHSA
IIRDEGEAIARCSGGLICPAQRKESLKHFVSRKALDVEGLGDKIIEQLVDREYVKTPADL
YYLTKVQLCTLEKVGEKLATNIMNALDKSKSTTLSRFIYALGIPNVGEVLAENLANELGS
LTEIEQANIEQLSTVTDVGKVVAENIRYFINEPHNQAVIKQLLSDEIGIHWPVTDVASQL
INNVFFKDKTVVLTGTLTQMSRDDAKALLKRFGAKVTGSVSKNTDLVIAGDAAGSKLAKA
QSLGIDIIDEAQLIELIK
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcaaaagctaatttctattcaaaatacaatcgaatctttacgtcaaaaattgaga
tatcatgaatatcaatatcatgtgcgtgatgcacccgaaatcccagatgttgaatatgat
aaattgatgcaagagttgatcaagcttgagtctgaaaatcctgatttgatcacgactgat
tcacctacccagcgcgtcggtgcggcgccgttgtccgaactcggtaatatcaaacacgaa
cagccgatgttatctttagataatgtgtttgatgaagagggtttcatggcctttaataag
cgtgtaacggagcgcttagggttaacagaagacgatgaaatcgtcttctgttgtgagctt
aaactcgatgggcttgcggtcagtctgttgtatgaaaacggtgagcttatacaagcagct
acccggggagacggtagtgttggtgaagatattacggccaatgttcgcacaataaagtca
atccctctgcgtttagaaggcgacaatatccctgagcgcttagagattcgcggtgaagtc
tatatgacgcacaaaggttttgccaaattaaatcatgatgcagagaaaagaggagataaa
ttatttgctaatcctcgtaatgcagcagcaggatctttaaggcagcttgatcctaaagtc
accgcgaagcgcccattaacattttattgttatggtgtaggtatcttttctggcggccaa
ttacctgatacgcactatgcacgtttaatgcaatttaaggcgtggggtataccagtaagt
gataaggttcagctgcatagtcacgctcaggaagtcattgaatattaccatcatatcgag
gcgcagcgagccgcgttaggttttgatatcgatggtgttgtcattaaagtcaatcgtatc
gatttacaagaaaaattgggatatgtagccagagcgccaagatgggcaaccgcttttaaa
tttccggctcaagaacagataacacaattaaaacaagtcgactttcaggttggtcgcaca
ggcgcgattacccctgtcgcaaggttagtccctgtacaagttgcaggtgtaacggtcagt
aacgcaacattgcataatagtgatgagattgacagattaggtctgcgtgaaggcgatttt
gtgattattcgccgggccggtgatgtgatacctaaagtggtctctgtggtgctagaaaag
cgatcggctgagacgaaagaaattcattttccaaccgattgcccagtgtgccactcagcc
attattcgtgatgaaggcgaggcgatagcgcgctgtagtggcggattaatttgtcctgcg
caacgtaaagaatctctgaagcattttgtttcacgtaaagccttggatgtagaagggctt
ggcgataaaattattgagcagcttgttgatcgcgaatatgttaaaacacctgctgacctc
tattatttgaccaaggtacaactctgtacattagagaaagtcggcgagaaactggcgact
aacattatgaatgcgctagataaatctaaatctacgaccctaagtcgttttatttatgct
ttaggtattcctaatgtgggtgaagtattggctgaaaatttagccaatgaattaggatca
ttaactgaaatcgaacaagccaatatagagcagctcagtacggtgacagatgttggaaaa
gtcgtcgctgaaaatattcgttactttatcaatgaacctcataatcaagcggtaataaaa
cagctgctgagtgatgaaattggtatccattggccggtcactgacgtggcgagccaatta
atcaataatgtattttttaaagataaaactgtcgtgctaacgggcactctcacgcaaatg
tcccgtgatgatgcgaaagccttattgaaacgatttggtgctaaagtcactggtagcgtg
tctaaaaataccgatttagtcattgccggtgatgctgcgggctcaaaattagccaaagca
cagtcgcttggtattgatattattgatgaagcacaactgattgaattaattaagtag
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