Undibacterium cyanobacteriorum: RF679_09145
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Entry
RF679_09145 CDS
T10254
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ucy Undibacterium cyanobacteriorum
Pathway
ucy03030
DNA replication
ucy03410
Base excision repair
ucy03420
Nucleotide excision repair
ucy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ucy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RF679_09145 (ligA)
03410 Base excision repair
RF679_09145 (ligA)
03420 Nucleotide excision repair
RF679_09145 (ligA)
03430 Mismatch repair
RF679_09145 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ucy03032
]
RF679_09145 (ligA)
03400 DNA repair and recombination proteins [BR:
ucy03400
]
RF679_09145 (ligA)
Enzymes [BR:
ucy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RF679_09145 (ligA)
DNA replication proteins [BR:
ucy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RF679_09145 (ligA)
DNA repair and recombination proteins [BR:
ucy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RF679_09145 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RF679_09145 (ligA)
MMR (mismatch excision repair)
DNA ligase
RF679_09145 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RF679_09145 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
DUF4796_N
Sas-6_C_CC
Bac_small_YrzI
Motif
Other DBs
NCBI-ProteinID:
WMW82426
LinkDB
All DBs
Position
2190095..2192176
Genome browser
AA seq
693 aa
AA seq
DB search
MQNDLFGAPDATPTNQSKKLEPEQRAQQLRDELNRHSYNYYTLDAPTIPDAEYDKLFKEL
QELEASNPALRAADSPTLRVGSAPLPEFTQVQHSVPMLSLNNGFEDEDVDAFDRRVREGL
GLGVVDTQTQIEYAIDLKFDGLAINLRYVNGVFTQAATRGDGYTGEDVTENIRTIRSIPL
RLQTESPPAILDVRGEVLMFKADFEKLNQRQRDSGSKEFANPRNAAAGSLRQLDSRITAQ
RSLRFFAYGIGLLEGAELPASHRALLDWYAQMGIPVCQEKAVVSGAAGLLEFYRQTQEKR
PQLAYEIDGVVYKVNRFDLQERLGFVSRAPRFAIAHKFPAEEALTIVQDIEVQVGRTGAI
TPVARLQPVFVGGVTVTNATLHNEEEVQRKDIRVGDTVIVRRAGDVIPEVVASVIERRPE
NTEVFRLPTECPICSSPIVKPEDEAIARCSGGWLKCAAQRKGGLFHFASRKALNIEGMGE
QLIDQLVDRSVVNTPADFYRLGLSALSELDRMAEKSAKNILEALETSKATSLPRFIYALG
IRHVGESTAKDLALHFTEMESFMQATEEQLLAVNDVGPVVARSIRSFFDDALNVELVRQL
ISAGIHWPAIEKVDLSSAVFAGKTLVLTGTLPTLSREQASALVEQHGGKVSGSVSKKTHF
VLAGEEAGSKLVKAQELGIRVLTEEEFLAMLQA
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatgatttatttggcgctcctgacgcaacgcccacgaaccaatccaaaaagctt
gagcctgaacagcgtgctcagcaattgcgcgatgagttgaatcgccattcctataactac
tacacactggatgcgccgacgatccccgatgcggaatacgataagctgttcaaggagttg
caagaacttgaggcgagcaatccagctttgcgtgcggcggatagtccaacgctgagagtc
ggctcggcgccgctaccagaatttacgcaggtacagcacagcgtgccgatgctgtctttg
aataatggctttgaagacgaagatgttgatgccttcgatcgtcgggtgcgcgaaggttta
ggcttgggtgtggttgatacacagacccagatcgaatatgcaattgatttgaaattcgat
ggtcttgcgattaatttgcgttatgtgaacggtgtcttcacacaagctgctacgcgcggc
gatggttacacaggcgaagatgtcaccgaaaacattcgcaccatccgcagcattccattg
cgcctgcaaacggagagtccacctgccattctcgatgtgcgcggtgaagtgttgatgttc
aaggctgactttgaaaaactcaatcaacgtcaacgcgatagcggtagcaaagagttcgcc
aatccgcgtaatgctgctgcagggagtttgcgtcaacttgattctcgtatcacagcacaa
cgcagcttgcgctttttcgcttatggcatcggcttgttagaaggtgccgaattgccggca
tcgcatcgtgctttactggattggtacgcgcagatgggaattcccgtttgccaagaaaaa
gcggttgttagtggcgctgctggtttacttgagttttatcgacaaacccaagaaaaacgc
ccacagctggcttatgaaattgatggggtggtctacaaggtcaatcgtttcgatttgcag
gaacgcttaggcttcgtctcacgcgctccgcgttttgctatcgcgcataaatttcccgcc
gaagaggcgctgacgattgtgcaagatatcgaggttcaggtaggacgcaccggcgcgatt
acgccggtggcgcgtctacaaccggtttttgttggcggcgtgacggtgaccaacgcaacc
ttgcataatgaagaggaagttcagcgtaaggacatacgagtgggcgacacggtgatcgtg
cgtcgcgctggggatgtgatccccgaagtggttgccagcgtgattgagcgccgtccagaa
aatacggaagtctttcgcttgccaactgaatgtcctatctgtagttcgcctatcgtcaaa
cctgaggatgaggcgattgcgcgatgctcgggcggatggttgaaatgtgctgcgcaacgt
aaggggggcttgttccattttgcctcgcgtaaagcgcttaatattgaaggcatgggggaa
cagttgatcgatcaactagtcgatcgcagtgtcgtcaacacgcctgcggatttctatcga
ctcggtctcagtgcattgtctgagcttgatcgtatggctgaaaaatctgcgaagaatatt
ctcgaagctttggaaacgtcgaaggcaaccagcttgcctcggtttatttacgcattaggc
attcgtcatgtgggtgagtcgactgccaaggatctcgccttgcatttcaccgaaatggaa
agttttatgcaagcgacggaggaacaactgttagcggtgaatgatgttggtcctgtcgtt
gcacgctcgattcgtagcttctttgatgatgctttgaacgtcgaactcgtgcgtcagttg
atctcagccgggatacattggccagctattgaaaaggtcgatctcagtagcgccgtgttt
gccggtaaaaccttggttttgactggtactttgcctaccctgagtcgcgagcaagcgagt
gctttggttgaacagcatggcggcaaggtgtccggctcggtttcgaagaagacgcatttt
gtattagctggcgaagaggcaggtagcaagttggttaaggcacaagaattaggaattcgc
gtgctgacagaagaagagtttttagccatgcttcaggcctga
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