Candidatus Uabimicrobium helgolandensis: UABHE_002753
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Entry
UABHE_002753 CDS
T10824
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
uhl Candidatus Uabimicrobium helgolandensis
Pathway
uhl03030
DNA replication
uhl03410
Base excision repair
uhl03420
Nucleotide excision repair
uhl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
uhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UABHE_002753 (ligA)
03410 Base excision repair
UABHE_002753 (ligA)
03420 Nucleotide excision repair
UABHE_002753 (ligA)
03430 Mismatch repair
UABHE_002753 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
uhl03032
]
UABHE_002753 (ligA)
03400 DNA repair and recombination proteins [BR:
uhl03400
]
UABHE_002753 (ligA)
Enzymes [BR:
uhl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UABHE_002753 (ligA)
DNA replication proteins [BR:
uhl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UABHE_002753 (ligA)
DNA repair and recombination proteins [BR:
uhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UABHE_002753 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UABHE_002753 (ligA)
MMR (mismatch excision repair)
DNA ligase
UABHE_002753 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UABHE_002753 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Mustang
Motif
Other DBs
NCBI-ProteinID:
XEY24957
LinkDB
All DBs
Position
complement(3782886..3784946)
Genome browser
AA seq
686 aa
AA seq
DB search
MSANIKKEIDELRKEIWRHAKLYYVDSQPVISDYEYDLLFRKLQELEKESPQYITPDSPS
QRVALIENTPFKRTSHRLPMLSIDNSYSLDEIRDFAQRVSRNISVNTSQISFVVEPKIDG
VAISLWYEKGVLVKALTRGDGIVGEDVTNNARTIRSLPLKLLGSAPDFLEVRGEIYLGHK
AFSKINKERASGGENIFANPRNAAAGTLKMLDSKVVRHRQLDFFAHSLGEYTNLDFEHHY
ETLNSFKELGLPVNEHCQHADNLEQVVDLCQNWVDKKQKLEYDIDGLVIKVNRIDLQQRL
ATTSRAPRWAIAYKFEHEQAITKLLDVIVQVGRGGTLTPVAILDPVQLAGTVVKRASLHN
YEDVARKDVRIGDYVTIVKAGEIIPQVLGSDVERRTGTETIISAPEMCPSCSGEVKRDDG
GVYLRCINDQCAQGFKAQLKFFASRKGMDISGLGEKIISQLVDKKMVASFSDLYALRKDD
LLLLERMGEKSAQKLIDNIENSKNVSLPKLIFSLGIRHVGTKASKILAKTYNSIDTLMTV
SIESLQDIDEIGPVMAESVYEYLRSEQGQNNIKALCSAGVKMEQIEEDTATSIPELPSQF
KGKNMVLTGSLVNYTRSELQKKLEDLGAVVRSSVSRNTDYVVAGENAGSKLTKANDLGIA
VISEKELEVMLEPIANIGENTQQSFF
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctaatataaaaaaagaaattgatgaattacgcaaagaaatatggaggcatgct
aaactttactatgttgattctcaaccagttattagcgactatgaatatgatttacttttt
cgtaagttgcaagagctagaaaaagaatcccctcagtatattactcctgattctccatca
caaagagtagctcttatagaaaatacacctttcaagagaacttcccaccgactaccaatg
ttgtcaatagataatagctattctttggatgaaattcgcgattttgctcaaagagtgtct
cgtaatatttccgttaatacttcacaaattagttttgtagtagagccaaaaatagatgga
gttgctattagtttgtggtatgaaaaaggtgtgttagttaaagccttaactagaggtgac
ggaattgttggagaggatgtgacaaacaatgcgcgaactattcgcagtttacctttaaag
ctgttagggagtgcacctgattttttagaagtacgcggtgaaatatacttaggtcacaaa
gctttttctaaaatcaataaagagcgtgctagtggtggtgaaaatatttttgctaatcca
cgtaatgctgcggcaggtacactaaaaatgctcgacagtaaagttgttcgtcatcgtcaa
cttgatttttttgctcacagtttaggtgaatatactaatctagactttgaacatcattat
gaaactcttaattcttttaaagaattaggattaccagtaaatgaacattgccaacatgct
gacaatttggaacaggtcgtagatctatgtcaaaactgggtggataagaaacaaaagtta
gaatacgatattgatggccttgttattaaggtaaatcgcattgatcttcaacaacgttta
gcgactacttctcgcgcgccacgttgggcaattgcatacaagtttgagcatgaacaagca
attacaaagttgcttgatgttattgttcaagtaggtcgcggtggaactttaactcctgtt
gctattcttgatccagtacaattagcaggaacggtagtgaagagagcctctttacataat
tacgaagacgttgctcgtaaagatgtgcgcattggagattatgttacgattgtgaaagcg
ggagaaattataccgcaagtcctaggtagtgatgttgaaagacgtacagggacagaaaca
ataatttccgcgccggagatgtgcccgagttgtagtggagaggtaaaaagagatgatggt
ggggtttatttacgttgtataaatgatcagtgtgcacaaggatttaaagcgcaattgaaa
ttttttgcttcgcgtaaaggtatggatattagtgggctaggtgaaaaaattatttcccag
cttgtagataaaaaaatggtagcgagtttctcggatctttatgctcttcgcaaagatgat
ttgcttcttttagaacgcatgggagaaaaatcagcgcagaaacttattgataatatcgaa
aatagtaaaaatgtttctttacctaaattaatattttctttgggaattcgccatgttgga
acaaaagcaagcaagattcttgccaaaacatacaacagtatagatactttgatgactgtg
tcgattgaatctttacaggatatagatgagataggtccagttatggcggaaagtgtctat
gaatatttgcgtagcgaacaaggtcagaataatattaaagctctgtgtagtgcaggagtt
aaaatggagcaaatagaagaagataccgcgacttctataccagaacttccatcgcaattt
aaaggtaaaaatatggttcttacaggctccttagtgaactatactcgtagtgagctacaa
aaaaaattagaggatctaggggctgttgttcgttcatctgtatcaagaaacactgattat
gttgttgcaggtgagaatgctggttccaaattgacaaaagcaaatgatttagggattgcg
gttatttctgaaaaagagctagaggttatgttagaaccgattgcaaacattggggaaaat
acgcaacaatcttttttttaa
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