Umezawaea sp. Da 62-37: RM788_17475
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Entry
RM788_17475 CDS
T09853
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ume
Umezawaea sp. Da 62-37
Pathway
ume03030
DNA replication
ume03410
Base excision repair
ume03420
Nucleotide excision repair
ume03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ume00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RM788_17475 (ligA)
03410 Base excision repair
RM788_17475 (ligA)
03420 Nucleotide excision repair
RM788_17475 (ligA)
03430 Mismatch repair
RM788_17475 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ume03032
]
RM788_17475 (ligA)
03400 DNA repair and recombination proteins [BR:
ume03400
]
RM788_17475 (ligA)
Enzymes [BR:
ume01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RM788_17475 (ligA)
DNA replication proteins [BR:
ume03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RM788_17475 (ligA)
DNA repair and recombination proteins [BR:
ume03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RM788_17475 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RM788_17475 (ligA)
MMR (mismatch excision repair)
DNA ligase
RM788_17475 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RM788_17475 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
HHH
RNA_lig_T4_1
HOIP-UBA
Motif
Other DBs
NCBI-ProteinID:
WNV91859
LinkDB
All DBs
Position
complement(3941986..3944121)
Genome browser
AA seq
711 aa
AA seq
DB search
MPADVRERHAALAEELLGHQFRYYLKDSPTVTDGEFDAMLKDLEAIEEAHPSLVTPESPS
QRVGGTFSTDFEAVDHLERMLSLDNVFDLDELKAWFERADKEVSGSAHYLCELKIDGLAI
NLLYRDGKLVRALTRGDGRTGEDVTLNVRTMADVPQRLTGTDAYPVPALVEVRGEVFMPV
EGFTELNAKLVEAGKPPYANPRNTAAGSLRQKDPKITAGRPLKLICHGIGKREGFEPSRQ
SESYEALRAWGLPVSEHTRVLDSYDDVAKHVEHWGAHRHDAEHEIDGIVIKVDEVPLQRR
LGTTSRAPRWAIAYKYAPEEATTTLLDIQVQVGRTGRVTPYAVMEPVKVAGSTVARATLH
NASEVERKGVWIGDRIVIRKAGDVIPEVLGPVIDVRPADARPFVMPIACPECGWELRPMK
EGDVDIRCPNVQCCPGQLRERLAYLGSRSALDVEVLGYEAAVALADSDVYSDEGDLFDLD
ADKLLRVEMFRKPVKHTKNSDLPADAVELTANAVKLLDNLEVAKRRPLWRIVVSFSIRHV
GPTASRALAREFGSIDRIVAATEEELAAAEGVGPTIALAVREWVDTPWRQGIVAKWRAAG
VRMEETRDAGVPRNLEGLSIVVTGSLETFSRDEAKEAILSRGGKAAGAVSKKTAFVVVGD
APGSKYDKAVQLKVPVLDEAGFRVLLDEGPDAAVGVATVGGESSGEGESDD
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgccgacgtccgcgagcggcacgccgcgctcgcggaggagttgctcggccaccag
ttccgctactacctgaaggactcaccgacggtcaccgacggcgagttcgacgcgatgctc
aaggacctggaggccatcgaggaggcgcacccctcgctggtcacgccggagtcgccctcg
cagcgggtgggcgggacgttctcgaccgacttcgaagcagtcgaccacctggagcggatg
ctcagcctcgacaacgtgttcgacctcgacgagctgaaggcgtggttcgagcgggcggac
aaggaggtctccgggagcgcgcactacctgtgcgagctgaagatcgacgggctcgccatc
aacctgctctaccgggacggcaagctcgtccgcgccctgaccaggggcgacggccgcacc
ggtgaggacgtcacgctcaacgtgcggaccatggccgacgtgccgcagcggctgaccggc
acggacgcctaccccgtcccggcgctggtcgaggtgcgcggcgaggtgttcatgccggtc
gaggggttcaccgagctgaacgcgaagctcgtcgaggcgggcaagccgccgtacgcgaac
ccgcgcaacaccgcggcgggctcgctgcggcagaaggacccgaagatcaccgcgggcagg
ccgctgaagctgatctgccacggcatcggcaagcgcgagggcttcgagccgtcgcggcag
tccgagtcgtacgaggcgctgcgggcctggggcctgccggtgtcggagcacacgagggtc
ctcgactcctacgacgacgtggcgaagcacgtcgagcactggggcgcgcaccggcacgac
gccgagcacgagatcgacggcatcgtgatcaaggtcgacgaggtgccgttgcagcgccgc
ctcggcacgacgtcccgcgcgccgcggtgggcgatcgcctacaagtacgcgccggaggag
gcgacgaccacgctgctggacatccaggtgcaggtcgggcgcaccgggcgggtcaccccg
tacgccgtgatggagccggtgaaggtcgccgggtcgacggtcgcgcgggcgacgctgcac
aacgcgagcgaggtcgagcgcaagggcgtgtggatcggcgaccggatcgtcatccgcaag
gccggtgacgtgatcccggaggtgctcgggccggtgatcgacgtccgcccggccgacgcg
cgcccgttcgtgatgccgatcgcctgccccgagtgcggctgggagctgcgcccgatgaag
gagggcgacgtcgacatccgctgccccaacgtccagtgctgccccggccagctccgggag
cggctggcgtacctgggcagccggtccgcgctggacgtcgaggtcctcggctacgaggcc
gcggtggcgctggccgactcggacgtctactccgacgagggcgacctgttcgacctggac
gccgacaagctgctccgggtcgagatgttccgcaagccggtgaagcacaccaagaactcc
gacctgcccgcggacgccgtcgagctgaccgcgaacgccgtgaagctgctggacaacctg
gaggtggccaagcggcgtccgctctggaggatcgtcgtctcgttctcgatccggcacgtc
ggccccaccgcctcgcgggccctcgcccgcgagttcgggtcgatcgaccggatcgtcgcg
gcgaccgaggaggagctggcggccgcggagggcgtcgggccgacgatcgcgctggccgtc
cgcgagtgggtggacacgccttggcggcaggggatcgtcgcgaagtggcgggccgcggga
gtccggatggaggagacccgcgacgccggcgtcccccgcaacctggaggggctgtcgatc
gtggtcaccggttcgctggagacgttctcgcgcgacgaggcgaaggaggccatcctgtcc
aggggcgggaaggcggccggtgcggtgtcgaagaagacggctttcgtggtggtgggggac
gcgccggggtccaagtacgacaaggccgtccagctgaaggtccccgtgctggacgaggcc
ggcttccgcgtcctgctcgacgagggccccgacgccgcggtcggagtcgccaccgtgggc
ggggaatcctcgggtgaaggggaatcggatgactga
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integrated database retrieval system
