Undibacterium sp. KW1: UNDKW_2496
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Entry
UNDKW_2496 CDS
T08678
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
und
Undibacterium sp. KW1
Pathway
und03030
DNA replication
und03410
Base excision repair
und03420
Nucleotide excision repair
und03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
und00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UNDKW_2496 (ligA)
03410 Base excision repair
UNDKW_2496 (ligA)
03420 Nucleotide excision repair
UNDKW_2496 (ligA)
03430 Mismatch repair
UNDKW_2496 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
und03032
]
UNDKW_2496 (ligA)
03400 DNA repair and recombination proteins [BR:
und03400
]
UNDKW_2496 (ligA)
Enzymes [BR:
und01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UNDKW_2496 (ligA)
DNA replication proteins [BR:
und03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UNDKW_2496 (ligA)
DNA repair and recombination proteins [BR:
und03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UNDKW_2496 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UNDKW_2496 (ligA)
MMR (mismatch excision repair)
DNA ligase
UNDKW_2496 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UNDKW_2496 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Bap31_Bap29_C
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BBB60769
UniProt:
A0A6N4T438
LinkDB
All DBs
Position
2754357..2756414
Genome browser
AA seq
685 aa
AA seq
DB search
MQNDLLDAAAMAADTSTLVAQAESLRAELNRHAHAYYVLDNPSVPDAEYDRLFSELQHLE
EAHPELKTLDSPTNRVGGTPLPEFGQVQHAVPMLSLNNGFEDEDVINFDRRAREGLDAQN
DIVYAIDLKFDGLAINLRYVDGVFMQAATRGDGFTGEDVTENIRTIRSIPLRLRVENPPK
ILDVRGEVLMFKRDFEKLNQRQRDAGAKEFANPRNAAAGSLRQLDSKITAQRSLRFFAYG
IGLLEGMNVPPSHRALLDWYKQAGIPVCEENALVSGASGLLAFYKTIQARRDNLDYEIDG
VVYKVNDFASQQSLGFVSRAPRFAIAHKFPAQEALTTVLDIEVQVGRTGAITPVARLAPV
FVGGVTVTNATLHNEEEIQRKDIRIGDTVSVRRAGDVIPEVVASILERRPADSRQFVMPV
ECPICGSPIQKPEDEAIARCSGGWIKCSAQRKGGLSHFASRKAMNIDGVGEQLIDQLVDK
NVVTTAADLYKLGLRSLVELDRMAEKSAQNVLSALETSKLTSFPRFIYALGIRHVGESTA
KDLAAHFGNADALMKATEEQLLEVSDVGPVVAKSILRFFSDPLNVELVEQLLASGIHWPA
IEVQEKGEQVLAGKTLVLTGTLPTLSRDQATEVIEKAGGKVSGSVSKKTSYLVAGDDAGS
KLVKAQELGISILTEAELLQLCSGS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatgatcttttggatgctgccgccatggcggcagatacttcaacattggtagca
caggcagaaagtctgcgcgcagagttgaacaggcatgcccatgcctattatgtgctggat
aaccccagtgtccccgatgctgagtacgacagactgttttcggaacttcagcatctcgaa
gaagcgcatcctgaattaaagaccctggattcaccgacgaatagggtaggtggaacacct
ttgcctgaatttggtcaggtacaacatgccgtgcccatgttgtccctgaataatggcttt
gaagatgaggatgtcattaattttgaccgccgtgcccgtgaggggcttgatgcgcaaaat
gatattgtctatgcgatagatttgaagtttgatggcctggccatcaacttgcggtatgtc
gatggcgtgttcatgcaggcagcaacacgcggtgacggttttactggcgaggatgtcact
gaaaatattcgcaccatacgcagcatcccattgcgcttgcgggtagaaaatccgccaaag
atattggatgtgcgtggtgaagtattgatgttcaaacgcgattttgaaaaactcaatcag
cgccagcgagatgccggtgccaaagagtttgccaacccgcgtaatgctgctgctggcagc
ctgcgtcagcttgattcaaaaattactgcccagcgtagcctgcgtttctttgcctatggc
ataggcttgttggaaggcatgaatgtgcctccctcacatcgcgccttgctggactggtat
aagcaggcaggcatcccagtctgcgaagaaaatgccctggtcagtggtgcgtctggtttg
ctggcgttttacaagacaattcaagccaggcgcgacaacctggattacgagattgatggc
gtagtctataaggttaacgattttgccagtcagcagtcgctaggttttgtatcacgcgcg
ccacgctttgcaattgctcacaaattcccggcccaggaagctttaacgacagtactggat
atagaagtgcaggttggcagaactggtgccattacaccagttgccaggttggccccggtt
tttgtcggtggcgtcacggtaaccaatgcgaccctgcacaatgaagaagaaatacagcgc
aaggatatacgcataggtgacacggtttctgtgcgccgtgctggtgatgtcatacctgag
gttgtcgccagcatattggaaagacgtccggcagactctcgccagtttgtcatgccagtt
gaatgcccgatttgtggctcacccatacaaaagccggaagatgaggcgattgcccgctgc
agcggtggctggataaaatgttcggcacaacgtaaaggggggctgtctcattttgcctcc
cgcaaggccatgaatattgatggcgttggcgagcagctcattgatcaattggttgacaag
aatgtggttacaactgccgcagatttatataagcttgggttgcgctcactggtagaactg
gaccgcatggcagagaagtctgcgcaaaatgtattgagtgcgctggaaacttccaagctg
accagtttccctcgctttatctatgcgctgggcatacgccatgtcggtgaatctacagca
aaagatctggctgcgcattttggcaatgcagatgcattgatgaaggcgacggaagaacaa
ttgctggaagtgtccgatgttgggcccgtcgttgcaaaatctatcttgcgcttcttctct
gacccacttaatgtggaactggtggagcaattactggcgtccggcatacactggcccgct
attgaggtgcaggaaaaaggcgagcaggtattggcaggcaagacgctggtattgacaggt
acactgcccacactgagtcgcgatcaggcgacagaggtcatagagaaggctggtggaaaa
gtgtcaggctcagtatcaaaaaaaaccagttatctggttgccggtgacgatgcgggaagc
aagctggtaaaagcgcaagaattgggtattagtattttgacagaagcagaattgcttcaa
ctttgttccgggagctga
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