Ureaplasma parvum serovar 3 ATCC 27815: UPA3_0127
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Entry
UPA3_0127 CDS
T00680
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
upa
Ureaplasma parvum serovar 3 ATCC 27815
Pathway
upa03030
DNA replication
upa03410
Base excision repair
upa03420
Nucleotide excision repair
upa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
upa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UPA3_0127 (ligA)
03410 Base excision repair
UPA3_0127 (ligA)
03420 Nucleotide excision repair
UPA3_0127 (ligA)
03430 Mismatch repair
UPA3_0127 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
upa03032
]
UPA3_0127 (ligA)
03400 DNA repair and recombination proteins [BR:
upa03400
]
UPA3_0127 (ligA)
Enzymes [BR:
upa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UPA3_0127 (ligA)
DNA replication proteins [BR:
upa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UPA3_0127 (ligA)
DNA repair and recombination proteins [BR:
upa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UPA3_0127 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UPA3_0127 (ligA)
MMR (mismatch excision repair)
DNA ligase
UPA3_0127 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UPA3_0127 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
5_3_exonuc
RNA_ligase
KIF21A
DUF6510
Motif
Other DBs
NCBI-ProteinID:
ACA33058
UniProt:
B1AIB0
LinkDB
All DBs
Position
159525..161546
Genome browser
AA seq
673 aa
AA seq
DB search
MDKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTNNSPSV
KVGGFVSEKFNKVKHKRPMLSLSNAFNDDDLKKFDQDNQNASVDLKGYVVEPKIDGLSIS
IIYKNAKLHQAITRGDGINGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVYMAFHDFY
EMNDNLEESDKKFANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGIKTHYESIQ
FLRDNKFKVSDLIVKVDTINEVINQIDCYTKVRDKLSYMIDGIVIKINNLEVYDEIGYTS
KFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSMVEYATLHNFDFI
KEKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYEPIINCPSCQSVLVRENDEVDQ
RCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAIINKFYDANLIKNIADLYYLQKHKEFI
LTSDFKIKEKSFSNLINSINNSKKCSLEFLLTAFGIRHVGPNLAKKIAKQFKTMTALMHA
NFDELTNVDACGEKAALSLINWFNDEHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEY
KNKTFVITGSFSISRDEIKTILEKYYHAKVKNSVSKKTDYVLVGTEAGTKLEKAKLLGVK
IIENEFWKKDNNF
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggataaaataaaagctaaaattgacgaattaaaacaaaaactagaccaatgaaactat
gaatattatgttttagatgatccaagtgtgccagaccatgtttatgatcaaacaatgcgg
gagttaatcgaacttgaaaataattatcctcaatttaaaactaacaattcaccaagtgta
aaggttggcggctttgtttcagaaaaatttaataaagtaaaacataaaagaccaatgtta
tcactttcaaatgcttttaatgatgatgatttaaaaaaatttgatcaagataatcaaaat
gctagtgtcgatttaaaagggtacgtagttgaacctaaaattgatggtttaagcatttct
attatttataaaaatgccaaattacaccaggcaattacaagaggagatgggattaatggc
gaagatgttacttccaatattttaacgattaaagacattcctcactatattgatcaaaaa
tataaagactacgaaattgaagttcgtggtgaagtctatatggcttttcatgatttttat
gaaatgaatgataatttagaagaaagtgataaaaaatttgctaatccaagaaatgctgct
gctggaacattaagaagtctagataattcaattgttgcagaacgtaaattaagtgctttt
atgtattatttggttaatgcacaagaactaggaattaaaacgcattatgaaagtattcaa
tttttaagagataataaatttaaagttagtgatttaattgttaaagtcgatacaattaat
gaagttattaatcaaattgattgttatactaaagtgcgtgataaactttcatatatgatt
gatggtattgttattaaaattaataatttagaagtttatgatgagattggttatacttct
aaatttcctaaatgagcaattgcttataaatttccagctaatgttgttagctcacaatta
ctagaaattattaacgatgttgggcgtacaggaaaaatctcatatgttgctaaaattaaa
ccaattttattagatggtagtatggttgaatacgctactttacataactttgattttatt
aaagaaaaagacattcgaattaatgatgaaattaaaatttataaagcaggggatgtaatt
ccttatgttgatggtgttgatttatcaaaacgtttagcaaatagtgtaccttatgaacca
attataaattgcccttcatgccaatcagttttagtacgtgaaaatgatgaagttgaccaa
cgctgcttaaatatttatggatgtaaaaaaatcaatattgaaaaaatcgtttattttgtt
tcacgtaattgcatgaatattgagggaatgagtgatgccattattaataaattttatgat
gctaatttaattaaaaacattgcagatttatactatttgcaaaaacacaaagaatttatt
ttaactagtgattttaaaattaaagaaaaaagttttagtaatttaattaatagtattaat
aattcaaaaaaatgttctttagaatttttattaacagcttttggaattcgtcatgttgga
ccaaatttagctaaaaaaatagctaaacaatttaaaacaatgactgctttaatgcacgct
aattttgatgaattaactaatgttgatgcatgtggggaaaaagcagccttatcattaatt
aattggtttaatgatgagcataatgtttctttagttaatcaattacaacaagttggtgta
aatatggaatatattgatgattttatttatgatgataacatcaatataattgatgaatat
aaaaataaaacttttgttattactggttcatttagtattagccgtgatgaaattaaaact
attttagagaaatattatcatgcaaaagttaaaaacagtgtttctaaaaaaacagattat
gttttagttggcactgaagcgggtacgaaattagaaaaagctaaattattaggtgtgaaa
attattgaaaatgaattttgaaaaaaggataataatttttaa
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