Undibacterium parvum: EJN92_19555
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Entry
EJN92_19555 CDS
T05754
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
upv
Undibacterium parvum
Pathway
upv03030
DNA replication
upv03410
Base excision repair
upv03420
Nucleotide excision repair
upv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
upv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EJN92_19555 (ligA)
03410 Base excision repair
EJN92_19555 (ligA)
03420 Nucleotide excision repair
EJN92_19555 (ligA)
03430 Mismatch repair
EJN92_19555 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
upv03032
]
EJN92_19555 (ligA)
03400 DNA repair and recombination proteins [BR:
upv03400
]
EJN92_19555 (ligA)
Enzymes [BR:
upv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EJN92_19555 (ligA)
DNA replication proteins [BR:
upv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EJN92_19555 (ligA)
DNA repair and recombination proteins [BR:
upv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EJN92_19555 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EJN92_19555 (ligA)
MMR (mismatch excision repair)
DNA ligase
EJN92_19555 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EJN92_19555 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AZP13996
UniProt:
A0A3Q9BTU8
LinkDB
All DBs
Position
4486580..4488649
Genome browser
AA seq
689 aa
AA seq
DB search
MQDDFFKASETADELFSKLTIRAEYLRQEINRHAHAYYVADAPLVPDAHYDALFLELQTL
EAQHPELITKDTPTQRVGGIALPEFSQVQHAVPMLSLNNGFEADDILAFDKRAKEGLATS
EELEYAIDLKFDGLAINLRYIDGVFSQAATRGDGYTGEDVTENIRTIRSIPLRLNTAHPP
AVLDVRGEVLMFKADFDRLNQRQRDAGAKEFANPRNAAAGSLRQLDSKITSQRSLSFFAY
GIGALGAADLPASHRDLLDWYRTLGIPVCEENAVVRGASGLLAFYEQVQQKRSALAYEID
GVVYKVNAFSEQGKLGFVSRAPRFAIAHKFPAQEALTTVLDIEVQVGRTGAITPVARLAP
VFVGGVTVTNATLHNEEEILRKDIRIGDTVSVRRAGDVIPEVVASILDSRPAHATMFVMP
TVCPICGSAIVKLEDEAIARCSGGWLKCAAQKKGALFHFASRKAMNIDGVGEQLIEQLVD
KQLVTTAADLYKLDTASLFKMDRMAEKSAANILAALENSKLTSLGRFIYALGIRHVGETT
AKDLALSFADIDKLMAANEEQLLNVPEVGPVVAKSLLLFFSDQQNVDIVRQLIASGVHWP
TVTPTNDSNLPLLGKTLVLTGSLPNLSREQASGLIEKNGGKVAGSVSKKTSYVVAGDDAG
SKLVKARELNISVLTEAELLLLCSPALEE
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaagatgatttttttaaggcatccgaaactgccgatgagttattcagtaagcttact
attcgcgccgagtatttgcgccaggaaataaatcgccatgcgcatgcctattacgtcgca
gatgcgccgctagtcccagacgcgcattacgatgcgctgttcttagaactgcagacatta
gaagcgcagcatcctgagttaattaccaaagatacgccgacacaacgtgtcggtggcata
gcattgccagaatttagtcaagtgcaacatgcggtgcctatgctgtctttgaataatggc
tttgaggcggacgatattttggccttcgataaacgcgccaaagagggtttggcgacgtca
gaagagctggaatatgcgatagatttaaaattcgatggcttagccattaatttgcgttac
atcgatggtgtgtttagccaagccgcaacacgtggcgacgggtataccggcgaagatgtg
accgagaatattcgcaccatacgcagtattccactgcgtctcaataccgcacatccgcca
gcagtcttggatgtgcgtggtgaagtgttgatgtttaaagcggacttcgatcgcttaaat
cagcgtcaacgcgacgctggcgccaaagaatttgctaatccacgcaatgcggcggcgggt
agtttgcgtcaactagattctaagattacctcgcaacgcagtctgagtttttttgcctat
gggataggcgcgcttggagctgccgacttacctgcatcacatcgcgatttactcgactgg
tatcgtactttgggcatccctgtgtgcgaggaaaatgcggtggtccgcggcgcctctggc
ttgctagcgttttatgaacaggtccagcaaaaacgcagtgccttagcttacgagatcgat
ggggtggtgtacaaagttaatgcgttttcagagcagggaaagttggggttcgtttctagg
gcaccacgctttgcgattgcgcataaattcccggcgcaagaagccttaaccacggtcttg
gatattgaggtgcaagtcggtagaactggtgcgatcacgcctgtggctagactggctcca
gtgtttgtcggcggtgtcacggtgaccaatgcgaccttgcataatgaagaagaaatactc
agaaaagacatacgcataggcgacaccgtgagcgttcgacgggctggagatgtcattcct
gaagtagtcgcaagtatcctcgatagtcgccccgcacatgcaacgatgtttgtcatgcca
acagtctgtcctatctgtggatcggctatcgtcaagcttgaagatgaggccatcgctcgc
tgttcgggtggctggcttaaatgtgccgcccaaaagaagggggctttgtttcattttgcc
tcgcgcaaagcgatgaacatcgatggtgtgggcgagcaattgatagagcaattggtagac
aaacagttggtcacaactgctgctgatctgtataaattggatactgccagcttgttcaaa
atggacagaatggcagagaagtcggctgcaaatattctggcggcactagaaaattcgaaa
ttgactagcctgggccgctttatttatgcattaggcatacgccacgttggtgagacgacg
gcaaaagatcttgcacttagttttgccgatattgataagctcatggctgccaacgaagag
caattattgaatgttcctgaagttggtccggtggtggcaaagtcgcttttgctatttttc
tcagatcagcaaaatgtggacatcgtcaggcaattaattgcctctggcgtgcattggccg
acagtcactccaaccaatgatagtaacttgcccttattaggcaaaaccttggtcttaacc
ggtagcttaccgaatttaagtcgcgagcaagcgagcggattgatagagaaaaacggcgga
aaagtggcaggctcggtgtcaaaaaaaaccagttatgtggtcgctggtgatgatgctggt
agtaagctagtaaaggcaagagaactaaatatcagtgtattgacagaagccgagttgctg
ctgctctgcagtccagcattagaggagtaa
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