KEGG   Uncinocarpus reesii: UREG_04988
Entry
UREG_04988        CDS       T01132                                 
Name
(RefSeq) hypothetical protein
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
ure  Uncinocarpus reesii
Pathway
ure03018  RNA degradation
ure03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ure00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    UREG_04988
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UREG_04988
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ure03019]
    UREG_04988
   03041 Spliceosome [BR:ure03041]
    UREG_04988
Messenger RNA biogenesis [BR:ure03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     UREG_04988
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     UREG_04988
Spliceosome [BR:ure03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    UREG_04988
 Complex C
  U2 snRNP components
    UREG_04988
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 8438042
NCBI-ProteinID: XP_002584299
UniProt: C4JR99
LinkDB
AA seq 135 aa
MADGDDGAAPSFSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIY
MVEEDENEQEIIKVESRRRVQAMAHDTHSGIDNKATRRNAICSRFVISTPLLSPARLLNS
TLGDSVVLISPQSSP
NT seq 408 nt   +upstreamnt  +downstreamnt
atggctgacggagatgatggcgccgcgccatccttttcggagcctcttgacttggtccga
ttatcactcgacgagatcgtgtttgtgaagcttagaggagaccgagaactcaaaggccgc
ctacacgcctacgatagccactgcaacctggttctcggcgacgttgaggagacaatctac
atggtggaggaagacgagaatgagcaagagattatcaaggtagagagccgcaggcgagtc
caggcaatggcgcacgacactcactctggcatagacaataaagcgacaagaagaaatgct
atttgttcgaggttcgttatatctacgcctcttttgtcaccagcccgtttactgaattcg
actttaggcgactctgttgtcctcatatcgccgcagtcctcaccttga

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