Usitatibacter rugosus: DSM104443_01017
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Entry
DSM104443_01017 CDS
T06990
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
uru
Usitatibacter rugosus
Pathway
uru03030
DNA replication
uru03410
Base excision repair
uru03420
Nucleotide excision repair
uru03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
uru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSM104443_01017 (ligA)
03410 Base excision repair
DSM104443_01017 (ligA)
03420 Nucleotide excision repair
DSM104443_01017 (ligA)
03430 Mismatch repair
DSM104443_01017 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
uru03032
]
DSM104443_01017 (ligA)
03400 DNA repair and recombination proteins [BR:
uru03400
]
DSM104443_01017 (ligA)
Enzymes [BR:
uru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DSM104443_01017 (ligA)
DNA replication proteins [BR:
uru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DSM104443_01017 (ligA)
DNA repair and recombination proteins [BR:
uru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DSM104443_01017 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSM104443_01017 (ligA)
MMR (mismatch excision repair)
DNA ligase
DSM104443_01017 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DSM104443_01017 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Mst1_SARAH
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QJR09966
UniProt:
A0A6M4GSA0
LinkDB
All DBs
Position
1018744..1020756
Genome browser
AA seq
670 aa
AA seq
DB search
MAAKPAARAEALRREIERHNKLYYNDAAPEISDAEWDSLLKELQEIEAAHPELATPDSPT
QRVGSKPSEGFEEVTHRVAMLSLANAFEDEDVESFDRRCRELLNVPEVEYACELKFDGLA
VTLVYENGVFVQGATRGDGAVGEDVSNNLRTVRSIPLRLEAKKPPKLLEVRGEVLMFRRD
FDALNKRAEAAGEKTFVNPRNSATGALRQLDPKLTAQRRLSFFAYGIGANEGFKVPPTHS
ELLDALADLGFPVAKDRKVARGVKGLLDFYKAVGAKRPKLDYDIDGVVYKVNAFAQQGSL
GFVSRAPRWAIAHKFPAEEATTELLDIDIQVGRTGAITPVARLKPVFVGGTTIVNATLHN
EDEIRRKEIWKRDTVVVRRAGDVIPEVARVAKEGPREKADRFTMPTKCPVCGSAIAKGED
EAVARCTGGLFCPAQRKQALIHFAGRRAMNIENLGYKLVEQLVESGLVRTAPDLYKLGVA
KLAELERMAEKSAQNVVDGIEKSRETTLARFIYALGIRNVGETTSKDLARHFGSLDKLME
ADVEALQGTPDVGPIVAESIARFFAEKHNREVVEQLRAAGVHWTEGEGAAAKAATGPFAG
KIVVLTGTLSIPRDDAKALIEEAGGKITGSVSKKTDYVVAGTEAGSKLDKANELGVPVLD
EAQFLKMLDK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaagcccgcggcgcgcgccgaggcgctgcggcgcgagatcgagcgccacaac
aagctctactacaacgacgccgcgcccgagatctcggacgcggagtgggactcgctcctc
aaggaactgcaggagatcgaggccgcgcatcccgagctcgccacgcccgattcgccgacg
cagcgcgtgggctcgaagcccagcgagggtttcgaggaagtcacgcaccgcgtcgccatg
ctctcgctcgccaacgccttcgaggacgaggacgtggagtccttcgaccgccgctgccgc
gagctgctgaacgtcccggaagtcgagtacgcctgcgagctcaagttcgacggcctcgcg
gtgacgctggtctacgagaacggcgtcttcgtgcagggcgccacgcgcggcgacggcgca
gtgggcgaggacgtcagcaacaacctgcgcaccgtccgctcaattcccctgcgtctcgag
gcgaagaagccccccaagctgctcgaggtgcgaggcgaggtgctgatgttccgccgcgac
ttcgacgccctgaacaagcgagccgaggccgccggcgagaagacgttcgtgaacccgcgc
aactccgccacgggggcgctccgccagctcgatcctaagctcaccgcccagcgccgcctc
tcgttcttcgcctacggcatcggcgcgaacgagggcttcaaggtgccgcccacgcactcg
gagctgctcgacgcgttggcggacctgggcttcccggtcgccaaggaccgcaaggtcgcg
cgcggcgtgaagggcctgctcgatttctacaaggcggtcggcgccaagcgcccgaagttg
gactacgacatcgacggcgtcgtctacaaggtgaacgcgttcgcgcagcagggctcgctc
ggcttcgtctcgcgcgcgccgcgctgggccatcgcgcacaagtttccggcggaagaggcg
accaccgagctgctggatatcgacatccaggtcggccgcaccggcgccatcacgcccgtg
gcgcggctgaagccggtcttcgtcggcggcaccaccatcgtgaacgcaacgcttcacaac
gaggacgagatccgccgcaaggagatctggaagcgcgacacggtcgtcgtccgccgcgcc
ggggacgtgattcccgaggtggcgcgcgtggcgaaggaaggcccgcgggagaaggccgac
cggttcacgatgcccacgaagtgccccgtgtgtggttcggctattgccaagggcgaggac
gaggcggtcgcgcgctgcaccggcggcctcttctgcccggcgcaacgcaagcaggcgctg
atccacttcgcgggacgccgcgcgatgaacatcgagaacctcggctacaagctggtggag
cagctcgtcgagagcgggctcgtgcgcaccgctccggatctctacaagctgggcgtggcc
aagctggcggagctggagcgcatggcggagaagtcggcgcagaacgtcgtggacggcatc
gagaagagccgcgagacgacgctcgcccgcttcatctacgcgctcggcatccgcaacgtc
ggcgagactacgtccaaggacctcgcgcggcacttcggctcgctcgacaagctgatggaa
gccgacgtggaggcgctacagggcacgcccgacgtggggcccatcgtcgccgaatcgatc
gcgcggtttttcgcggagaaacacaaccgcgaggtggtcgagcagcttcgagccgccggc
gtgcactggacggagggcgaaggggccgcggccaaggcggcgaccggtccgttcgcgggt
aagattgtggtgctcaccggaacgctctcgatcccgcgcgacgacgcgaaggcgctgatc
gaggaagcgggcggcaagatcaccgggtcggtgtcgaaaaagacggactacgtggtcgcc
ggaacggaagcaggcagcaagctcgacaaggcgaacgaactcggcgtcccggtcctggac
gaagcgcaattcctgaagatgctcgacaaatga
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