Uruburuella testudinis: LVJ83_04250
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Entry
LVJ83_04250 CDS
T08135
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ute
Uruburuella testudinis
Pathway
ute03030
DNA replication
ute03410
Base excision repair
ute03420
Nucleotide excision repair
ute03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ute00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LVJ83_04250 (ligA)
03410 Base excision repair
LVJ83_04250 (ligA)
03420 Nucleotide excision repair
LVJ83_04250 (ligA)
03430 Mismatch repair
LVJ83_04250 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ute03032
]
LVJ83_04250 (ligA)
03400 DNA repair and recombination proteins [BR:
ute03400
]
LVJ83_04250 (ligA)
Enzymes [BR:
ute01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LVJ83_04250 (ligA)
DNA replication proteins [BR:
ute03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LVJ83_04250 (ligA)
DNA repair and recombination proteins [BR:
ute03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LVJ83_04250 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LVJ83_04250 (ligA)
MMR (mismatch excision repair)
DNA ligase
LVJ83_04250 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LVJ83_04250 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UOO82681
UniProt:
A0ABY4DUG2
LinkDB
All DBs
Position
938605..941043
Genome browser
AA seq
812 aa
AA seq
DB search
MNDNARRIRALTEQLNRYAYEYYTLDAPSVPDAEYDLLFRELEALEAAHPALRLPESPTQ
RVGGEPLAGFAEVRHTVPMLSLSNAFSPQDEHGHFQHAEMLAFDERVRSGLGGAQPEYVI
EPKFDGLAISLLYQNGVLVQAATRGDGSSGEDVTRNVRTIANIPLKLHGADVPAMIEVRG
EVLMLKADFAQLNERQQAEGQKLFANPRNAAAGSLRQLDSRITARRRLHFFAYSIAQQTG
GKVPATHMEELAYAHELGFSLPKGHYACLSDIHAVLAFYEAMSAKRAELPYEIDGMVIKV
NSIAQQQTLGFISRAPRWAIAHKFPAEEALTVVLDIDVQVGRTGAVTPVARLQPVFVGGV
TVTNATLHNEGETQRKDVRIGDTVVVRRAGDVIPEVVRVVPERRPMQAVSVSDGLGAPVQ
NELFVDTAQSGAERPSESKMPLYPQYRLPANCPICGSRIEREAGEAVARCSGGMLCRAQR
AQGLIHFASRKAMDIDGLGQRQIEALVAQDLVHHFADLYRLDVAVLQKMKEQAVDKEEGA
LLSDGLKKQSPTKWAENILAGIEASKQPELARFLFALGIRHVGERTAKILAQALGSLNKV
RTAPEPVLACLPDIGSVVAHSAAQFFARPEQAAMIDELLTAGVVPQPQPVKLPLAEYVQP
QRWLARLPGFKISETKALALWSLAGQNVDGLLHDKALPADWQQWRSADENRTLLENMRHF
LQEMPSENDAPLSDGLNHAAAGKTFVLTGTLPTLKRDEAQAMIEVAGGKVSGSVSKKTDY
VVAGEAAGSKLEKAQALGVAVLDEAALLALLH
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgaacgataacgcccggcgcatacgcgcactcaccgagcagctaaaccgttacgcctac
gaatattacacccttgatgcacccagcgtgcccgatgccgaatacgatcttctgtttcgc
gaattggaagcgcttgaggcggcgcatcctgctctgcgtttgccggaaagccccacacag
agagtgggcggcgaacctttggccgggtttgccgaggtgcgccacaccgtgccgatgctc
tcgctcagcaatgctttttcgccgcaagatgaacacgggcatttccagcatgccgaaatg
ctggcgtttgacgagcgtgtgcgcagcggcttgggcggtgcacagcccgaatatgtgatt
gagccgaagtttgacggcctggccatcagcctgctctatcaaaacggcgtgttggtgcag
gcggccacacgcggcgacggcagcagcggcgaagatgttacccgcaacgtgcgcaccatt
gccaatattcccttgaagctgcatggcgcagatgtgccggcaatgatagaagtgcgcggc
gaagtgttgatgcttaaagccgattttgcccagctcaacgagcggcagcaagccgaaggc
caaaagctttttgccaatccgcgcaatgccgcggcgggcagcctgcgccagctcgattcg
cgtattaccgcccgtcgccgcctgcatttttttgcctacagcattgcgcagcaaaccggc
ggcaaggtgcccgccacacacatggaagagctggcttatgcccatgagctcggcttcagc
ctgcctaaaggccattacgcctgcttgagcgatattcatgcggtgctggctttttacgaa
gccatgtcggccaaacgcgccgaattgccgtatgaaatcgacggcatggtaattaaagtg
aattcgattgcgcaacagcaaacgctgggctttatttcgcgtgcaccgcggtgggcgatt
gcacacaaatttccggccgaagaagcgctgacggtggtgctggacatcgatgtgcaggtg
gggcgtaccggcgccgttaccccggtagcgcgtttgcagccggtgtttgtcggcggtgtt
accgttaccaatgccacgctgcacaatgaaggcgaaacgcagcgcaaagatgtgcgcatc
ggcgatactgtggtggtgcgccgcgccggcgatgtgattcccgaagtggtgcgggtggtg
ccggagcgccggccgatgcaggctgtgagcgtttcagacggccttggcgcgcctgttcaa
aacgagttgtttgtcgatacggcccaaagcggggcagaaaggccgtctgaaagcaaaatg
ccgctgtatccgcaataccgtctgcccgcaaactgcccgatttgcggcagccgcatcgag
cgtgaagccggcgaagcggtggcgcgttgcagcggcggtatgttgtgccgggcacagcgc
gcacaaggtctgattcatttcgcctcacgcaaagcgatggacatcgacggcttggggcag
cgccagattgaagcgttggtggcacaggatttggtgcaccattttgccgatttataccgc
ttggatgtggcggtgctgcaaaaaatgaaagagcaggccgtcgataaagaagagggcgca
ttgctttcagacggcctgaaaaaacaatcgcctaccaaatgggcggaaaatattctcgcc
ggtatcgaagcgagcaaacaacctgagctggcgcgttttctgtttgcgctcggcatccgt
catgtcggcgagcgcacggctaaaattttggcgcaggcattgggctcgctgaataaagtg
cgtaccgcgcccgagccggtgttggcctgtctgcccgatatcggcagcgtggtggcgcat
tcggcggcgcaatttttcgcccgccccgagcaggcggcgatgatagacgagctgctgacc
gccggggttgtgccgcaaccgcagccggtaaagctgccgttggccgaatatgtgcagccg
cagcgctggctggcgcggttgcccggctttaaaatcagcgaaaccaaagcgctggcattg
tggagcctggccggccaaaatgttgacggcctgctgcacgacaaggccctgcctgccgat
tggcagcaatggcgctcggctgatgaaaaccggacgttgctggaaaacatgcggcacttt
ttacaggaaatgccgtctgaaaacgatgcaccgctttcagacggcctgaaccatgccgca
gccggcaaaacctttgtgctcaccggcacattgccgacattgaaacgtgatgaagcgcaa
gccatgattgaagtggcgggcggcaaggtgtcgggcagcgtgtcgaaaaaaaccgattat
gtggtggccggagaagcggccggcagcaagctggaaaaagcgcaggcgctcggtgtggcc
gtattggatgaagcggccttgctggctttgctgcattga
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