Ureibacillus thermophilus: DKZ56_00465
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Entry
DKZ56_00465 CDS
T09780
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
uth
Ureibacillus thermophilus
Pathway
uth03030
DNA replication
uth03410
Base excision repair
uth03420
Nucleotide excision repair
uth03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
uth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DKZ56_00465 (ligA)
03410 Base excision repair
DKZ56_00465 (ligA)
03420 Nucleotide excision repair
DKZ56_00465 (ligA)
03430 Mismatch repair
DKZ56_00465 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
uth03032
]
DKZ56_00465 (ligA)
03400 DNA repair and recombination proteins [BR:
uth03400
]
DKZ56_00465 (ligA)
Enzymes [BR:
uth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DKZ56_00465 (ligA)
DNA replication proteins [BR:
uth03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DKZ56_00465 (ligA)
DNA repair and recombination proteins [BR:
uth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DKZ56_00465 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DKZ56_00465 (ligA)
MMR (mismatch excision repair)
DNA ligase
DKZ56_00465 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DKZ56_00465 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
BRCT_2
Zn_ribbon_NUD
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
QBK24517
UniProt:
A0A4P6UPT0
LinkDB
All DBs
Position
complement(102087..104093)
Genome browser
AA seq
668 aa
AA seq
DB search
MKDKELEKRVAELNKLLHEYAHAYYVLDNPIVPDAVYDQLMQELMEIEKEHPELIYPDSP
TQRVGGKPLEGFNKVTHRYPMLSLSNAFNEEDLRDFDRKIRQAIGDKYNYVCELKIDGLA
ISLRYENGIFVQGATRGDGAVGEDITVNLKTIKDIPLRLKEPVTIEVRGEAYMPKKSFME
LNREREQNGEELFANPRNAAAGSLRQLDSKITASRNLATFIYGIGGDGEAYGIDSHAEML
DYLEFLGFHVNKERALCETIDDVLAFIKKWTTERPNLPYEIDGIVIKVNRYAHQEELGTT
VKSPRWAIAYKFPAEEAITKVLDIDWTVGRTGVVTPTAILEPVKLAGSIVSRASLHNEDL
IREKDIRIGDTVIVHKAGDIIPEVVRVILEQRPEGTVPYEMPKTCPACGSELIRIDDEVA
IRCVNPACPAQIAEGIKHFASRNAMNIDGLGDKITELLLKENYIRDVADLYFLKVDELAK
LDRMGQLSATNLVNAIERSKENSLERLLFGLGIRHVGEKAAKLIAEEFETMDRIMEATVE
ELVAIHEIGEKIAQSVVSYFEKEEARQLIARLKEAGVNMAYKGKKAGAEIADSPFAGKTV
VLTGKLERLTRNEAKAKIEELGGKVTGSVSKKTDLVIAGADAGSKLTKAQELGIEVWDEN
RFIEQLEK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaaagataaagagcttgaaaaacgcgtcgctgaactgaataaactgctgcatgaatat
gcccatgcgtactacgtgttggacaatccaatagtgccggatgctgtctatgaccagctg
atgcaagaattaatggaaatcgaaaaagaacatccggaactcatttatccggattctcca
acgcagcgggtcggaggaaaaccgcttgaagggtttaataaagtcactcacagatacccg
atgttgagtttatccaacgcttttaacgaagaagatttgcgggattttgacaggaaaatc
cgccaggcgattggcgacaaatacaattatgtgtgtgaactgaaaattgatggacttgcc
atttcattaagatatgaaaacggcatttttgtccaaggcgctacccgcggcgatggggca
gtaggtgaagatattacggtgaatttaaaaaccattaaggacataccattgcgattaaaa
gagccggtaaccattgaagtgcgcggtgaagcctacatgccgaaaaagtctttcatggag
ttaaatagagaacgggagcaaaatggagaagaactttttgccaatccccgcaatgccgct
gccggttcccttcgccaattggattcaaaaatcactgcatcacgaaatttagcgaccttt
atttacggaatcggcggagatggggaagcatacggaatagacagccacgcggaaatgctt
gattacttggagttcctaggtttccacgttaataaagaacgggcgctttgtgaaacaatt
gatgatgttttagcgtttattaaaaagtggacaacagaacgtccaaacttgccttatgaa
atcgatggcattgtcatcaaagtgaatcgatatgctcatcaagaagaactaggaacaacc
gtaaaaagtcctcgttgggcaattgcttataaatttcctgcagaagaagccatcacaaag
gtacttgatattgattggacagtagggcgtactggagttgtaacaccaacagcgattttg
gagccggtaaaacttgcaggttcaattgtcagccgagcttcccttcataatgaagattta
attcgcgaaaaagatattcgaatcggggataccgtaatcgtgcataaagcaggagatatt
attccggaagtggtccgcgttattttggaacagcgcccagaaggcacagttccttatgaa
atgccgaaaacttgccctgcctgcggaagcgaactgatccgcattgatgatgaagtggcc
attcgctgtgtaaaccctgcctgcccggcccaaattgcggaaggcattaaacatttcgca
tccagaaacgcaatgaatattgatggcttaggggataaaattacagaattgctattaaaa
gaaaactatatacgtgatgtggcggatctttactttttaaaagtagacgaactggccaaa
ttggatcgaatggggcagctttccgcaacgaatctagtcaatgcgattgagcggtcaaaa
gaaaattcattggagcgtttattattcggccttggcattcgtcatgtcggcgaaaaggct
gcaaaactcattgcagaggaatttgaaacaatggaccgcattatggaggcgacagtagaa
gaattagtggcaatccatgaaattggcgaaaaaattgcccaatcggtggtttcctatttc
gaaaaagaggaagcaagacaattaattgcccgattgaaagaagccggcgtcaacatggca
tacaaagggaaaaaggccggtgcagaaatagccgatagcccgtttgccggaaaaacggtc
gtattaacaggaaaattagaacgattgacacgcaacgaagcaaaggcgaaaatagaagag
ttaggcggtaaagtcacaggaagtgtaagcaaaaagacagatcttgtcattgcaggagcc
gatgcaggttcaaaattgacaaaagcgcaagaactaggaatagaagtttgggacgaaaat
cgctttattgaacaattagaaaagtaa
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