Ustilaginoidea virens: 66068624
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Entry
66068624 CDS
T11247
Symbol
UV8b_07847
Name
(RefSeq) uncharacterized protein
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
uvi Ustilaginoidea virens
Pathway
uvi03018
RNA degradation
uvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
uvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
66068624 (UV8b_07847)
09123 Folding, sorting and degradation
03018 RNA degradation
66068624 (UV8b_07847)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uvi03019
]
66068624 (UV8b_07847)
03041 Spliceosome [BR:
uvi03041
]
66068624 (UV8b_07847)
Messenger RNA biogenesis [BR:
uvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
66068624 (UV8b_07847)
mRNA degradation factors
5'-3' decay
Lsm complex
66068624 (UV8b_07847)
Spliceosome [BR:
uvi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
66068624 (UV8b_07847)
Complex C
U2 snRNP components
66068624 (UV8b_07847)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF8787
Motif
Other DBs
NCBI-GeneID:
66068624
NCBI-ProteinID:
XP_043001279
LinkDB
All DBs
Position
7:join(803792..803914,803986..804097,804148..804188)
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AA seq
91 aa
AA seq
DB search
MADAGDGASHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGDVEETIYA
VDDDDETISRKSEMLFVRGDSVVLVSPQVAF
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgcgggcgacggcgccagccatgtctcggaaccgctggatctggtgcgactc
ttgctgaacgaggtggtttttgtcaagctcagaggcgatcgagagctcaagggcaagctc
cacgcttacgatagtcattgtaaccttgtgctcggagacgtcgaggagaccatctacgcg
gttgacgatgacgacgagaccatcagccgcaagtcggaaatgctgtttgttcgaggtgat
agtgttgtcttggtatcgccgcaagtcgccttttaa
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