Variovorax sp. PAMC 28711: AX767_20220
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Entry
AX767_20220 CDS
T04325
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vaa
Variovorax sp. PAMC 28711
Pathway
vaa03030
DNA replication
vaa03410
Base excision repair
vaa03420
Nucleotide excision repair
vaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AX767_20220 (ligA)
03410 Base excision repair
AX767_20220 (ligA)
03420 Nucleotide excision repair
AX767_20220 (ligA)
03430 Mismatch repair
AX767_20220 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vaa03032
]
AX767_20220 (ligA)
03400 DNA repair and recombination proteins [BR:
vaa03400
]
AX767_20220 (ligA)
Enzymes [BR:
vaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AX767_20220 (ligA)
DNA replication proteins [BR:
vaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AX767_20220 (ligA)
DNA repair and recombination proteins [BR:
vaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AX767_20220 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AX767_20220 (ligA)
MMR (mismatch excision repair)
DNA ligase
AX767_20220 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AX767_20220 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DUF4796_N
BRCT_2
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
AMM26415
UniProt:
A0A126ZJ03
LinkDB
All DBs
Position
complement(4194345..4196423)
Genome browser
AA seq
692 aa
AA seq
DB search
MTPREQAVQEAAALSEQLRHHAHRYYVLDAPELPDAAYDQLFQRLQALEAEHSDLRTADS
PTQRVGGKVLDGFTKVRHKVPMLSIRTETDITAAGASAFDARVRKELGLAEDGPPVDYVC
ELKFDGLALNLRYEHGVLVQAATRGDGEVGEEVTQNIRTVQQIPLRLNGSAPPVVEVRGE
VYMRRDQFEALNERQRAKIAAGQKNEKVFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGL
GEVTPASEGGPDCTTQFDWLQQFHAWGFPVATQTQRARGAIELIAFHETIGRQRDALPYD
IDGVVYKVDSVALQRQLGFVSREPRWAVAHKYPAQEQLTTVQGIEVQVGRTGKLTPVAKL
APVFVGGVTVTNATLHNEDEARRKDVRVGDTVIVRRAGDVIPEVVGVVPESAAKPDDQRG
PVFTMPRQCPVCGSDAVREEDEVDYRCTGGLFCAAQRKEAILHFAARRAVEVEGLGDKLV
EQLVDANLIRTLPDLYKLGFTTLVGLDRMAEKSAKNIVAALEKSKQTTLPRFLFGLGIRH
VGESTAKDLAKHFGKLDAIMDATEVELLEVNDVGPVVAQSLRTFFDQPHNREVVEQLRAC
GVTWEEGEPAPRTVLPLAGKTFVITGTLPTLARDEAKDKLESAGAKVAGSVSKKTDYVVA
GAEAGSKLDKAIALGVEVIDEAKMLALLAAGE
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgaccccacgggagcaggcggtgcaagaggccgctgcattgagcgaacagttgcgccac
cacgcgcaccgctattacgtactggacgcgccggagctgcccgatgcggcgtacgaccaa
ctgttccagcgcctgcaagccctggaagccgaacattccgacctgcgcaccgccgactcg
cccacgcaacgcgtcggcggcaaggtgctcgatggcttcaccaaggtgcgccacaaggtg
ccgatgctgtcgatccgcaccgagaccgacatcaccgccgccggcgcgagcgcgttcgat
gcgcgcgtgcgcaaggaactcggcctcgccgaggacgggccgccggtcgactacgtgtgc
gagctcaagttcgacgggctcgcgctcaatctgcgctacgagcacggcgtgctcgtgcag
gccgccacgcgcggcgacggcgaggtcggcgaagaggtcacgcagaacatccgcaccgtg
cagcagattccgctgcggctgaacggcagcgcgccgccggtggtggaagtgcgcggcgag
gtctacatgcgtcgcgaccagttcgaggcgctgaacgagcggcaacgcgcgaagatcgcg
gccggccagaagaacgaaaaggttttcgtgaacccgcgcaatgcagcggccggggcggtg
cggcagctcgatccggccatcgccgccgcacggccgctgagcttcttcgcgtacgggctc
ggcgaggtcacgccggcgagcgagggtggccccgactgcaccacgcagttcgattggctt
cagcagtttcatgcgtggggttttccggtcgcgacgcagacgcagcgtgcgcgcggcgcg
atcgaactgatcgctttccacgagacgatcgggcggcaacgtgatgcattgccctacgac
atcgacggcgtcgtctacaaggtcgacagcgtcgcgctgcaaaggcagctgggcttcgtt
tcccgcgagccgcgctgggcggtggcgcacaagtacccggcgcaagagcagctcaccacg
gtgcagggcatcgaagtccaggtgggccgcaccggcaagctcacgcccgtggcgaagctg
gcgccggtgttcgtgggcggcgtgacggtgacgaacgcgacgctgcacaacgaagacgaa
gcgcggcgcaaggacgttcgcgtcggcgacaccgtgatcgtgcggcgcgccggcgacgtg
atccccgaagtggtcggcgtggtgcccgaaagcgcagcgaagcccgacgatcagcgcggg
ccggtcttcaccatgccgcgccagtgcccggtgtgcggctccgatgcggtgcgcgaagaa
gacgaggtcgattaccgctgcaccggcggcttgttctgcgcagcgcagcgcaaggaagcg
atcctgcatttcgcggcacgtcgcgcggtggaggtcgaaggcctcggcgacaagctggtc
gagcaactcgtcgacgccaacctgatccgcacactgcccgacctctacaagctcggcttt
accacgctggtgggcctcgaccgcatggccgagaagtcggcgaagaacatcgtcgcggcg
ctggaaaagtccaagcagaccacgctgccgcgcttcctgttcgggctcggcatccggcat
gtgggcgagagcacggccaaagaccttgccaagcatttcggcaagctcgacgcgatcatg
gacgcgacggaagttgaactgcttgaggtgaacgatgtcggcccggtcgtggcccaaagt
ctgcgcaccttcttcgatcagccgcacaaccgcgaggtggtcgaacaactgcgcgcttgt
ggcgttacctgggaagaaggcgagcccgcaccgcgcacggtgctgccgcttgcgggcaag
actttcgtgatcaccggtacccttcctacgctggcgcgtgacgaggcgaaggacaaactc
gagtcggccggtgccaaggtcgccgggtcggtcagcaagaagaccgactacgtggtggcg
ggcgccgaggccggcagcaaactcgacaaggcaatcgcgctgggggtcgaggtgatcgat
gaagcgaagatgctggcgttgcttgccgccggagaatga
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