Vulcanimicrobium alpinum: WPS_30740
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Entry
WPS_30740 CDS
T09508
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vab
Vulcanimicrobium alpinum
Pathway
vab03030
DNA replication
vab03410
Base excision repair
vab03420
Nucleotide excision repair
vab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WPS_30740 (ligA)
03410 Base excision repair
WPS_30740 (ligA)
03420 Nucleotide excision repair
WPS_30740 (ligA)
03430 Mismatch repair
WPS_30740 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vab03032
]
WPS_30740 (ligA)
03400 DNA repair and recombination proteins [BR:
vab03400
]
WPS_30740 (ligA)
Enzymes [BR:
vab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WPS_30740 (ligA)
DNA replication proteins [BR:
vab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WPS_30740 (ligA)
DNA repair and recombination proteins [BR:
vab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WPS_30740 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WPS_30740 (ligA)
MMR (mismatch excision repair)
DNA ligase
WPS_30740 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WPS_30740 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
BDE07798
LinkDB
All DBs
Position
complement(3024717..3026663)
Genome browser
AA seq
648 aa
AA seq
DB search
MLDNPQISDEDYDALLRELLDLEEAHPELRTPDSPTQRVGGTPAAGLPPYVHARPMLSLA
NAFEPAELAAFDARVRKLGAISGDIAYTCELKIDGLAVSLRYDDGRLTAGGTRGDGTTGE
EITANLRTIKSIPLALRDASGAPPRHIDVRGEAYLRKSDFATLNERREELGLRPFENPRN
TAAGGLRQKDPQAAARRRLSFYAYAVGEIDMREPPRTQWELLEYLRGLGFRVNEHARRVG
SIDEVVAFIAAFEEQRESLDYEIDGVVVKVDDLALQTRLGSVGKDPRWAIAYKFRAREVR
TKLLAIEVNVGRTGTLNPYAVLEPVRVGGVTVSSATLHNQEYIRSNDIRAGDVVTVIRAG
DVIPRVVGPVLELRTGSPPEWTMPTTCPVCGADVDFPEGEAMARCTNATCPAQLVERVRH
FASRGAMDIEGVGDQLSAALVESGLVHDASDLYQLNLENLLSLPRMAEKSASNVLAAIAG
SKTRGLARVLYGLGIRMVGSQNAAILAGDFGSIEALAAATESDLVQSDGIGDEIARSVVL
FFAQEPNRAMIARLTDAGVDMTAPKRERAPAGALAGKTLVLTGTLPTLTRDEASELIVAA
GGKVTGSVSKKTDYVVAGEEAGTKLTKAEQLGIPILDESGLRRLLNGT
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacaatccgcagatcagcgacgaggactacgacgcgctgctgcgcgagctgctc
gatctcgaggaagcgcatcccgaactgcggacgcccgattcgccgacgcagcgcgtcggc
ggcacgccggcggcgggccttccgccgtacgtccacgcgcgtccgatgctcagcctcgcg
aacgccttcgaaccggccgaactcgccgcattcgacgcgcgcgtccgcaaactcggcgcg
atatcgggcgacatcgcctacacctgcgagttgaagatcgacggtctcgccgtctcgctg
cgctacgacgacgggcgcctgacggcgggcggcacgcgcggcgacggaacgaccggtgaa
gagatcaccgcgaacctgcggacgatcaagtcgatcccgctcgcgctgcgcgacgcgtcc
ggcgctccgccgcggcacatcgacgtgcgcggcgaagcgtacctgcgcaagagcgacttc
gcgacgttgaacgaacgccgcgaagaactcgggctgcgcccattcgagaacccgcgcaac
accgccgccggcggcctgcggcagaaagatccccaagctgcagcacgtcgccggctttcg
ttttacgcttatgcggtcggcgagatcgacatgcgggagccgccgcgcacccagtgggaa
ctgctcgagtatctgcgcggcctcgggttccgcgtcaacgaacacgcgcgccgcgtcggc
tcgatcgacgaggtggtcgcgttcatcgcggctttcgaggagcagcgcgagtcgctcgac
tacgagatcgacggcgtcgtagtgaaggtcgacgatctcgcgctgcagacccggctcggc
agcgttggcaaagacccgcgctgggcgatcgcgtacaagttccgcgcccgcgaggtgcgc
acgaaactgctggcgatcgaggtcaacgtcggccggacgggaacgctcaacccctacgcg
gtgctcgaaccggtgcgggtcggcggcgtgacggtgagcagcgcgacgctgcacaatcag
gagtacatccgcagcaacgacatccgcgccggcgacgtcgtcacggtgattcgcgcgggg
gatgtgatcccgcgcgtcgtgggcccggtgctcgaactgcgtaccggttcaccgccggag
tggacgatgccgacgacgtgccccgtctgcggcgcagacgtcgacttccccgaaggcgag
gcgatggcgcgctgcacgaacgcgacctgccccgcgcagctcgtcgagcgcgtccgccac
ttcgcctcgcgcggcgcgatggacatcgagggcgtcggcgatcagctctcggcggcgctg
gtcgagagcggcctcgtgcacgacgcgagcgacctgtaccaactcaatctggagaacctg
ttgtcgctcccgcggatggccgaaaagtcggcctccaacgtgctcgcggcgatcgcgggg
tcgaagacgcgcgggctcgcgcgcgtgctgtacggcttggggatccgcatggtcggaagc
cagaacgcggcgatcctggccggcgatttcggttcgatcgaggcgctggccgccgcgacg
gagagcgatctcgtgcagagcgacggaatcggcgacgagatcgcgcgcagcgtcgtgctg
ttcttcgcgcaggagccgaaccgcgcgatgatcgcgcgcctgactgacgccggcgtcgac
atgacggcgcccaagcgcgaacgcgcgccggccggcgcgctcgccgggaagactctcgtg
ctgacggggacgctgccgacgctgacgcgcgatgaggcgtcggagctgatcgtcgccgca
ggcggcaaagtcacgggttctgtctcgaagaaaaccgactacgtcgtcgccggcgaagaa
gccggcacgaaactcaccaaagccgagcagctcggcatcccgatcctcgacgaatccggc
ctgcgcaggctcctcaacggcacgtaa
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integrated database retrieval system
