Vagococcus xieshaowenii: E4Z98_02240
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Entry
E4Z98_02240 CDS
T05932
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vac
Vagococcus xieshaowenii
Pathway
vac03030
DNA replication
vac03410
Base excision repair
vac03420
Nucleotide excision repair
vac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E4Z98_02240 (ligA)
03410 Base excision repair
E4Z98_02240 (ligA)
03420 Nucleotide excision repair
E4Z98_02240 (ligA)
03430 Mismatch repair
E4Z98_02240 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vac03032
]
E4Z98_02240 (ligA)
03400 DNA repair and recombination proteins [BR:
vac03400
]
E4Z98_02240 (ligA)
Enzymes [BR:
vac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E4Z98_02240 (ligA)
DNA replication proteins [BR:
vac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E4Z98_02240 (ligA)
DNA repair and recombination proteins [BR:
vac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E4Z98_02240 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E4Z98_02240 (ligA)
MMR (mismatch excision repair)
DNA ligase
E4Z98_02240 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E4Z98_02240 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QCA28189
UniProt:
A0AAJ5EF03
LinkDB
All DBs
Position
464788..466797
Genome browser
AA seq
669 aa
AA seq
DB search
MTENQQTKMLELNRLLKQYAKEYYEQDQPSVTDAEYDRLYQELVTLEDAFPELTLADSIT
QVVGGQISSGFEKVHHETAMLSLGNAFSYEDLVAFEERIKKLVSGPIHYNCELKIDGLAI
SLKYQEGKFIQGATRGDGKIGENITENLKQVKDIPQVLPEPLTLEVRGECFMPKSSFVEL
NEEREAQGENIFANPRNAAAGSLRQLDTRVVAKRNLSSFIYAIATPEVLALTSQSDGLSK
MSALGFHINPEAVVCASIDDVWAYIQKYQELRHDLPYEIDGIVIKVNEFTLQEAIGYTVK
APKWAIAYKFPAEEAQTKLLAIEWTVGRTGVVTPTAVMEPVQLAGTTVARASLHNMDLIV
ARDIRLNDEVMVHKAGDIIPEVTRSLANKRDHDSQPYSAPTHCPECHSELVHLDEEVALR
CINPMCPAQIKEGVIHFVSRNAMNIDGMGPRVIEQLFEKELIKDVADLYKLTLEQLLTMD
KVKEKSANNLLQAIEASKQNSLERLLFGLGIRHVGAKAAQLIAEHFGTMAAIQQTTREEL
TAIDSLGEVIADSLVTYFDKEEAKLLVRELEDVGVNLTYKGLTTAEKATVDSVFQGKTVV
LTGTLTTYKRNDAKKLIESLGGKVTGSVSKKTDLVIAGEEAGSKLTKAQALGVTVWTEAQ
MVDAFERGE
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaaatcaacaaactaaaatgctcgaattaaatcgtttgttaaaacaatatgct
aaagaatattatgagcaagatcaaccttctgtcaccgatgcagaatatgatcgtttatac
caggaattggtcacactagaagatgcctttccagagttgacattagcagattccatcaca
caagttgtgggaggacaaatttcatcaggttttgaaaaagttcatcatgaaacagcgatg
ttgagtctgggtaatgcatttagctatgaagatttagttgcatttgaagaacgaattaaa
aaactcgtatcaggacctattcattataattgtgaattaaaaattgatggactagccatt
tcgttgaaataccaagaaggtaaatttattcaaggagcgacacgtggtgacggtaaaatc
ggtgaaaatattacagagaatttaaaacaagtcaaagacattcctcaagtattgccagaa
cctttaacgctagaagttcgtggcgagtgttttatgcctaaatcttcatttgtcgaatta
aatgaagaacgtgaagcacaaggagagaatatttttgctaatccacgtaacgcagcagca
gggagcttaagacaactagatacacgcgtggtggctaaacgtaatttaagtagttttatt
tatgcgattgctacaccagaagtattagccttaacatcacaatcggacgggctgtcgaaa
atgtcagccttaggttttcatattaatcctgaagcagttgtttgtgcatcaatcgatgat
gtgtgggcttatattcaaaaataccaagagctacgtcatgacttaccatacgaaattgat
ggcattgtgataaaggtgaatgagtttacgttacaagaggcaataggttatacggtcaaa
gcgccaaaatgggccattgcctataagtttccagctgaagaagctcaaacaaaattatta
gccattgagtggacagtcggtcgaacaggcgtcgttacaccaactgctgttatggaacct
gtacagttagcaggcacgacagttgctcgtgcaagcttacataatatggacttaattgtg
gcacgtgatattcgtttgaatgatgaggtcatggttcataaggcaggagacattattcct
gaagtgacacgttcacttgctaacaagcgtgatcatgatagccaaccttattcagcacca
acacattgtcctgaatgtcatagtgagttggttcatttagatgaagaagttgctttacgt
tgtattaatcccatgtgtccagcacaaattaaagaaggcgtgattcattttgtttcacgt
aatgcgatgaatattgacggtatgggaccacgagtgattgaacaactatttgaaaaagag
ttgatcaaagacgtagcggatttatataaactaacattagaacaattgctaactatggat
aaagtcaaagaaaaatcagccaataatttactacaagcaattgaagcaagcaagcaaaat
tctttagaacgtttattatttggtttaggtattcgccatgtaggcgccaaggctgctcag
ttaatagcagaacacttcggtactatggctgccatacaacagacaacacgtgaagaatta
acagcgattgattctttaggagaagttattgccgatagtttagtgacgtattttgataaa
gaagaagcaaaattgttggttcgtgagttagaagatgtgggggttaacttaacctataaa
ggattgaccacggctgaaaaagcaacggttgattctgtttttcaagggaaaacggtagtg
ctgactggaacattaacaacttacaaacgaaatgatgcgaagaaattaatcgaatcatta
ggtggaaaagtgacaggaagtgtatcgaaaaaaacagatttggttattgctggtgaagaa
gcgggtagtaaattaacaaaagcacaggcattaggtgtcacagtctggacagaagctcaa
atggtcgatgcttttgaaagaggtgaataa
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