Vibrio alfacsensis: D1115_11215
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Entry
D1115_11215 CDS
T05841
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vaf
Vibrio alfacsensis
Pathway
vaf03030
DNA replication
vaf03410
Base excision repair
vaf03420
Nucleotide excision repair
vaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D1115_11215 (ligA)
03410 Base excision repair
D1115_11215 (ligA)
03420 Nucleotide excision repair
D1115_11215 (ligA)
03430 Mismatch repair
D1115_11215 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vaf03032
]
D1115_11215 (ligA)
03400 DNA repair and recombination proteins [BR:
vaf03400
]
D1115_11215 (ligA)
Enzymes [BR:
vaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D1115_11215 (ligA)
DNA replication proteins [BR:
vaf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D1115_11215 (ligA)
DNA repair and recombination proteins [BR:
vaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D1115_11215 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D1115_11215 (ligA)
MMR (mismatch excision repair)
DNA ligase
D1115_11215 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D1115_11215 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
DNA_pol_lambd_f
HHH
5_3_exonuc
DUF4874
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AXY01632
LinkDB
All DBs
Position
I:complement(2304979..2306991)
Genome browser
AA seq
670 aa
AA seq
DB search
MSESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELISVDSPS
QRVGGKPLSEFSQVTHEVPMLSLDNAFDDEELNGFQKRAQDRVVGQTIKQYCCEPKLDGL
AVSLLYENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGNDWPTRLEVRGEVFMPKA
GFEKLNEMARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGATLATSH
YERFLQIKSWGLPMCPETKRVDSLEEVKAYYQDILACREALAYEIDGVVIKVDDIAIQER
LGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIERLQVMVGDQVVIRRAGDVIPQVVSVIRERRPDNAREIIFPNACPVCGSHVERIE
GEAVTRCTGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDREMVETPADLFKLSA
GVLTVLERMGPKSATNIVNALEKSKLTTLPRFLYSLGIREVGEATAANLAQHFKKLDVIQ
QATEEQLIEVQDIGMVVAKHITTFFGEEKNQAVVSDLLSQGIHWPEISAPQAGIELPLEG
KTVVLTGTLSQLGRSEAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLTKAQELGIEIQ
TEQDLLNLMK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatccgtacttcagcgactagaagagctaaaagagtcgctgcactaccacgca
gttcgttattacgtggaagataacccagagatcccagatgctgaatacgatcgtatgatg
cgcgaactattggatattgaagctgaacatccagagttgattagcgtggattctcctagc
cagcgtgtcggcggaaagccgttgtctgagttcagtcaagtgacccacgaagtgccaatg
ctgtcgttggacaatgcctttgatgatgaagagttgaatggttttcaaaagcgagcgcaa
gatcgagtcgttggacaaactattaagcaatattgctgcgaacccaagttggatggtctt
gctgttagcttgctgtatgaaaacggtgtacttgttcaagctgcaacacgtggtgatggc
acaacgggggaaaacatcacggaaaacgttcggaccatcagtgctattccgttaaaactg
caaggtaatgattggccaacgcgtttggaagtccgtggtgaagtattcatgccaaaagcg
gggtttgaaaagcttaacgagatggcccgtaagaaaggcgaaaaagtctttgttaaccct
cgtaatgcagcagcaggcagtctacgtcaattagattcgcggattaccgcttcgcgtcca
ctgagcttttatgcatacagcgtaggtgtggtagagggcgcgacgcttgcaactagccac
tatgagcgttttctacaaatcaagtcttggggcttaccgatgtgcccagaaaccaagcgc
gtagatagcttggaagaagtaaaagcgtactatcaagacattcttgcgtgtcgtgaagcg
ctggcctatgaaattgatggggtagtgatcaaagttgatgatattgccattcaagagcgt
cttggctttgttgcccgtgctccacgttgggctattgcttacaaattcccagctcaagaa
gaaatcacaacactgaatgaagttgaatttcaggttgggcgtactggtgcaatcacgcct
gtggcgaaactggaacccgtatttgtcggtggcgtaaccgtcagcaatgccacgctacac
aatgctgatgaaattgagcgcttgcaagtgatggtgggggaccaagtggtgatccgtcga
gctggtgatgtgattccacaagtggtgtcagtgatcagagaacgccgacctgacaacgcc
cgcgaaattattttcccgaatgcttgtccggtgtgtggttcgcatgtagagcgtatcgag
ggtgaagcagtaacacgttgtaccggtggcttggtgtgtcaggctcaacgtaaagaagcg
ttaaaacactttgtgtctcgtaaggctttagacgtagatggcttaggtgagaaagtcata
gagcagttagtcgatcgcgaaatggtggaaacacctgcagacctgtttaaactgtctgcg
ggcgtactaacggttttagagcgaatggggccaaagtctgcgaccaacatcgtcaatgcg
cttgaaaagtcaaagctgacgactctgccacgctttttatactcactaggtattcgtgaa
gtaggggaagcaacggcggcgaatttagctcagcattttaagaagctcgatgtcattcaa
caagcaacagaagaacagcttattgaagtgcaagacatcggtatggttgtggcaaagcac
attacgactttcttcggtgaagagaaaaaccaagcagtggtgagtgacctattatctcaa
ggcatccattggccagaaatctcggcacctcaagcggggattgagctgccattggagggc
aaaacggtagtgttaacgggcacgctttctcagcttggccgtagcgaagcaaaagaggca
ttgcaaaacttaggcgcgaaagtgacaggtagcgtctcgaaaaaaaccgatattctgttt
gctggtgagaatgcaggttcgaagctgacaaaagctcaggagttgggtattgagattcaa
acggagcaagacttgctcaatttgatgaaataa
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integrated database retrieval system
