Vibrio alginolyticus: N646_2945
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Entry
N646_2945 CDS
T02840
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vag
Vibrio alginolyticus
Pathway
vag03030
DNA replication
vag03410
Base excision repair
vag03420
Nucleotide excision repair
vag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N646_2945
03410 Base excision repair
N646_2945
03420 Nucleotide excision repair
N646_2945
03430 Mismatch repair
N646_2945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vag03032
]
N646_2945
03400 DNA repair and recombination proteins [BR:
vag03400
]
N646_2945
Enzymes [BR:
vag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N646_2945
DNA replication proteins [BR:
vag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N646_2945
DNA repair and recombination proteins [BR:
vag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N646_2945
NER (nucleotide excision repair)
GGR (global genome repair) factors
N646_2945
MMR (mismatch excision repair)
DNA ligase
N646_2945
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N646_2945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DUF4874
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AGV18755
UniProt:
A0A2I3CGF0
LinkDB
All DBs
Position
1:3187773..3189830
Genome browser
AA seq
685 aa
AA seq
DB search
MDFPTSPIENTRGFTMSESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLD
IEAENPDLITVDSPSQRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQERVGS
QSVKEYCCEPKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDW
PNRLEVRGEVFMPKAGFEKLNELARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYA
YSVGVVQGAELAASHYERFLQIKSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEI
DGVVIKIDDIAVQERLGFVARAPRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLE
PVFVGGVTVSNATLHNADEIERLQVKIGDHVVIRRAGDVIPQVVSVIKERRPETARDIVF
PTQCPVCGSHVERIEGEAVTRCMGGLVCQAQRKQALKHFVSRKALDVDGLGDKVIEQLVD
REMVKTPADLFKLSAGILTVLDRMGPKSAQNIVNALEKSKETTLPRFLYSLGIREVGEAT
AANLAMHFKTLGAIQNATEEQLIEVQDIGAVVAQHITTFFSEEQNQAVVKDLLEQGIHWP
EINTTEQVGELPLEGKTVVLTGTLSQLGRTEAKEALQALGAKVTGSVSKKTDILFAGENA
GSKLAKAQELGIEIKTEQDLLELMN
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
ttggatttcccaacctcaccgattgaaaatacacggggctttactatgtctgaatcagta
cttcagcgactagaagaactaaaagagtcgttgcattaccacgctgtgcgttactacgtg
gaagataacccagagatccctgatgccgagtacgaccgtttaatgcgagagttactggat
attgaagctgagaaccctgacttaataaccgtagactcgccaagccaacgtgtcggtggg
caacctctctctgcgtttagccaagtgacacatgaagtaccgatgctttcgcttgataac
gcgtttgatgatagtgaactcgatagtttccacaagcgcgcacaagagcgcgtgggcagc
cagagtgtgaaagaatactgttgtgagcctaaattggatggactcgccgtaagtttgtta
tatgagaatggcgttttagttcaggcggccactcgaggcgatggtactacgggtgaaaac
atcacagagaatgtgcgtacgattaaagctattcctttaaaactcagaggtaatgactgg
ccaaatcgtcttgaagttcgtggtgaagtctttatgccgaaagctgggtttgaaaagctc
aatgaattagcaaggaagaaaggcgagaaaatctttgttaatccacgtaacgctgcggca
ggtagcttacgacaattggattcacgtattacggcttctcgtccgcttagcttctatgca
tacagtgtaggcgtggtgcaaggtgcagaattggcagcaagtcattacgaacgctttttg
caaatcaaatcttggggactgccaatgtgtccggaaactaagcgagttgaaagcttggcg
gatgtaaaagcttactaccaagatatattgcagcgtcgtgatgccctcccttatgagatc
gatggtgtcgttattaaaattgacgatattgccgtgcaagagcgtctgggttttgttgct
cgcgctccacgttgggcgattgcctacaaatttccagctcaggaagaaatgacgacactg
aatgaagtggagttccaagtcggtcgcactggtgcgattacacctgttgctaaactagag
cctgtatttgttggtggggtaacggtaagtaatgcgacgcttcataacgcagatgagata
gaacgtctgcaagtcaagattggtgatcacgttgtgatccgccgtgctggcgatgttatt
ccgcaagtcgtttctgtcatcaaagagcgtcgaccagaaacagctcgagatattgttttc
ccaactcagtgtcctgtttgtggttcgcatgttgagcggatcgaaggagaagcggtaaca
cgttgtatggggggcttagtttgccaagcccaacgcaaacaagcgctaaaacactttgtt
tctcgtaaagcgttagacgttgacggtttaggcgataaagtgatcgagcagcttgttgat
cgtgagatggtgaaaactcctgctgacttatttaagttatcagcggggattttaaccgta
ctagatcgcatggggccaaagtctgcgcagaatattgtgaatgcgttagaaaaatccaaa
gaaacaactttacctcggtttttgtattcactggggatccgtgaagttggcgaggcaacc
gcagcaaacttagcaatgcactttaaaacgttgggagcgatccaaaatgctaccgaagag
cagttgattgaagtgcaagacatcggtgctgtggttgctcaacatattacgactttcttt
agtgaagaacagaaccaagcggtggttaaagatttgcttgaacaaggaattcattggcca
gagattaatactactgagcaggtgggggaattaccattagaaggtaaaacagtagtatta
acgggaacactttctcaactggggcgtacagaagccaaagaagccctccaagcactgggg
gctaaagtgacgggtagtgtttctaagaaaaccgatattttgtttgctggtgaaaatgca
ggttcgaagctcgcaaaggcacaagaactgggtatcgaaattaaaacagaacaagactta
ctcgaattgatgaattaa
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