Verticillium alfalfae: VDBG_03736
Help
Entry
VDBG_03736 CDS
T02227
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
val
Verticillium alfalfae
Pathway
val03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VDBG_03736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
val03041
]
VDBG_03736
Spliceosome [BR:
val03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
VDBG_03736
Complex C
U5 SnRNP specific factors
VDBG_03736
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_IV
EFG_C
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
DUF7342
Motif
Other DBs
NCBI-GeneID:
9532476
NCBI-ProteinID:
XP_003005783
UniProt:
C9SH33
LinkDB
All DBs
AA seq
983 aa
AA seq
DB search
MDDLYDEFGNFIGEEAGSEEASEHGANASDYVYGDDASEAPVPTGQELMELDDDGPSNAI
ILHEDKQYYPTAQQVYGDEVEILVREEDEQLLTEPIVAPVEQKKFNIEEADLPPVFFDRS
FMTDLMNFPEQTRNIALAGHLHHGKTAFMDMLVLETHDITDRLERRVGKNRDEQLRYTDV
HTLERERGLSVKSSPMSLVLPGTKGKSHLINILDTPGHVNFVDEVAAGLRLVDGVCLVVD
IVEGVQVNTEKIIKHAVLEDIPLTLIVNKFDRLILELKLPPKDAYFKLKHVIEEVNTVIE
NTVPGKGEAKRISPEKGNVLFSCTDMGWCFTLQSFAKMYADTYGGIDTDDFAKRLWGDVY
FNPKKRNFTRKPVEEGAQRSFVKFVLEPIYKIYTHTISDSPEDLKEVLGGLGIALKPSQY
KADAKTLLKLVCEQFFGPSTGFVDMVVRHIPSPLDGAEKWLQKYYTGPLDTKLAESMKTC
NQDGPVVVHITKLFNTTDAKNFNSFGRVLSGTARPGMQVRVLGEGYSLDDEEDMVMATVT
DVFISETRYNIPTDGVPAGNWVLLGGVDNSIVKTATIVPPKLDDDEDVFIFKPLTHFTES
VLKVAVEPINPSELPKMLDGLRKIQKSYPLIVTKVEESGEHIVLGTGELYMDCVLHDLRR
LYADMEIKISDPVTRFCETVVEQSATKCYAITPNKKNRITMIAEQLDKGISEDIESGKVK
IRDPIRKTAKYFEETYGWDKLAARSIWAFGPDDTGPNILQDDTLPSEVDKKLLTGVKETL
RQGFSWATREGPLCEEPIRNTKFRVTDVALAQEAIFRGGGQIIPTSRRACYSSFLMASPR
LMEPQYAISVTGPEDSATEVYTALARRRGHVLSDGPIPGTPLYRVNGLIPVIDSFGFETA
LRIQTQGSAMVSMTFDSWSIVPGDPLDKSVMVKPLQPATAQATARDFVLKTRRRKGLSED
VSVATFLEPEFYQSLMENGTLES
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atggatgatctatacgacgagttcggcaacttcattggcgaggaggctggctctgaggaa
gcgtcagaacatggcgccaacgcgtcggactatgtatatggagatgatgcaagcgaagca
cctgtgccgacaggccaggagctgatggagcttgacgacgatggtccgtcaaatgccatt
atcctacacgaagacaaacagtattaccccacggcgcaacaagtatatggcgatgaggtc
gaaattctggttcgggaagaagacgagcaattgctcacggaacccatcgtcgcgccagtc
gagcagaagaagttcaacatcgaagaggccgacctgcctcccgtcttcttcgatcgcagc
ttcatgaccgatttaatgaactttccggaacagacgcgcaacattgccctggctggccac
ctgcaccacggaaagacagcatttatggacatgttggtcctggagacgcacgatattacc
gacagactggaacgcagggtgggcaagaaccgagacgagcaactccgatacacagatgtc
cacactctcgagcgcgaacgtggactctccgtcaagtcttcacccatgagcttggtgttg
ccgggcaccaagggaaagtcgcaccttatcaacatcctcgacacgccgggacacgtgaac
tttgtcgatgaagtggcagccggcttgcgacttgtggatggtgtctgcctggtggtcgac
atcgttgagggtgttcaggtcaacacggagaaaatcatcaagcacgctgtgctggaggac
attcctctcacgttgatcgtcaacaagtttgatcgcctgatcttagagcttaagctgccg
cccaaggatgcctatttcaagctcaagcacgtcatcgaggaggtcaatactgtcatcgag
aacacagtccccggcaaaggcgaggcaaagcgtatcagccctgagaagggtaatgtcctt
ttctcttgcaccgatatgggctggtgcttcacgctgcagtccttcgccaagatgtatgca
gacacgtacggcggtatcgacacggatgattttgctaagaggctatggggtgatgtctac
ttcaacccaaagaagcgtaatttcaccaggaagcccgttgaggagggagctcagcgttcc
ttcgtcaagttcgtgttggagccaatctacaagatttacacacacacaatcagcgacagc
ccagaagatctgaaggaagtattgggggggctcggaatcgcgctcaagccttctcaatac
aaggcagatgccaagactctgctgaagttggtctgtgaacaattctttggaccttccact
ggatttgttgatatggtcgtccgacacattccctcgcctctggatggggccgagaagtgg
ttgcagaaatactacactggtcctttggacaccaagcttgcggagagtatgaaaacttgc
aaccaagatggcccggttgtggtgcacatcaccaagctgttcaatacgacagacgcaaaa
aacttcaactcgttcggtcgtgtgctgagcggaactgcccggcctggtatgcaggtacga
gttcttggcgaaggatactcgctggatgacgaagaagacatggtcatggccaccgtcacg
gatgtcttcatctctgagacgagatataacataccgacggatggcgtgccagcaggcaat
tgggttcttctcggcggcgtggataactcgattgtcaagacggctacaatcgttccccca
aagctggatgatgatgaggacgtgttcattttcaaaccattgacacacttcactgaatct
gtgctcaaggtggctgtggaacctatcaacccttcagagctaccgaagatgctggacggc
ctgcgaaagatccagaagagctacccactcatcgtcaccaaggtggaggagtctggagag
catattgtacttggtacaggagagctgtacatggactgcgtcctccatgacctgaggcgg
ctctatgccgacatggaaatcaagatctctgatcctgtcactcgcttctgcgagaccgtt
gtggagcaatcggctacgaaatgctacgccatcacaccgaacaagaagaaccgcatcacg
atgatagcggagcagcttgacaaggggatatccgaagatatcgagtctggaaaggtgaag
attcgtgaccctattcgcaagacagcaaagtatttcgaagaaacgtacggatgggacaaa
ctagcagcgaggagtatttgggcctttgggcctgatgacactggcccaaacattcttcaa
gacgacacacttccctctgaggtcgataagaagctcctgactggtgtcaaagaaaccttg
cgacaaggattcagctgggcaaccagagaaggcccactttgcgaagaacctattcgcaac
accaagttccgtgtgacggacgttgctctcgcgcaggaagcaatcttccgtggtggtggc
cagatcatccccacatcacgccgcgcctgttattcttccttcttgatggcatcaccacgc
ctgatggagccccaatacgctatttctgtgactgggcccgaagattcagcaactgaggtt
tacaccgcccttgctcgtcgtcgcggtcacgttctttcagatggtcctatacccggtacc
ccattgtatcgtgtgaacggactgatccccgtcatcgactcattcggcttcgaaacagcc
ctacgaatccagacacaggggtctgcaatggtcagcatgacctttgacagttggagcatc
gtgccaggcgacccgcttgacaaatctgtcatggtgaagcccctacagcctgcaactgct
caggccacggcgcgtgatttcgtactgaaaacgaggaggagaaagggccttagcgaggac
gtcagcgttgcgacgtttctagagcctgaattctaccagtcactgatggagaacggaacg
ctggagtcttag
DBGET
integrated database retrieval system
