Verticillium alfalfae: VDBG_04134
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Entry
VDBG_04134 CDS
T02227
Name
(RefSeq) ATP-dependent DNA ligase domain-containing protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
val
Verticillium alfalfae
Pathway
val03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VDBG_04134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
val03400
]
VDBG_04134
Enzymes [BR:
val01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
VDBG_04134
DNA repair and recombination proteins [BR:
val03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
VDBG_04134
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
Motif
Other DBs
NCBI-GeneID:
9534662
NCBI-ProteinID:
XP_003006181
UniProt:
C9SFT0
LinkDB
All DBs
AA seq
556 aa
AA seq
DB search
MDGEYCQVHVDLSKGSRSVQIFSKSGKDSTQDRVGIHKSDPYEHLMIVYFDVLLIDNESL
LGTRQSDRFNRLRDLIMCRTGHAELVHRQVIDLSLHQGASDLRRAFAESITHREEGLVLK
PDDPYFDFSKDKRSLAGCPIKLKKEYIGNFGDVGDFAVIGARYDPVKAKEYNIPGLKWTH
FYYGCLINKGDVQRHQTKPKFMVIDTVEVNTTMMKTILIHGNTLEIPFLENVCLELQIPP
RMTSDKRPTVVFREPLVFDIRCFSFDKPGNTGFWIPRFPQVSKVHFDRTFMNTMTFIELQ
VAAEEARNIPIMEDSQELLHWISLLEDADPRGVAVDALTQSTASSLLTTSPRRQSRTSQL
SNIASPDDTPTKLHRAPKIALFTISASSELAEPDHPNTQPCSTQELSLRHQIQEAEGLKR
GSTEDCVNRAENKRPKCNTLSAPAFSGHLHWSRTRAESSQRNSLTRQPLSNVCNNVSPVS
LTPSQSFSLDSTTKQKRSARSSYTAPLSFPVMTSREIASSRTLVSSTSSMRAARLQPFRH
RWFMSDRRPPLQDEES
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggacggcgagtactgccaagtgcacgtcgatctgagcaagggatcccgaagcgttcag
atcttttccaaaagcggcaaggatagcacacaagaccgagtaggcattcacaagtcggac
ccgtacgagcatctgatgatagtctactttgatgtgttgctcatcgataacgagtctctg
ctgggaacccgtcaatcagacagattcaaccgactcagagacctaattatgtgtcgcacc
ggacatgctgagttggtccacagacaggtgattgatcttagcctacatcaaggtgcttca
gatctccgacgagctttcgcagaatccattactcatcgggaggagggcctggtactgaag
ccagatgatccatactttgacttcagcaaggataagcggtcgcttgccggttgtccgatc
aagttgaagaaggagtatatcggaaactttggcgacgtgggagactttgccgtgatcggg
gctcgatacgaccctgtgaaggcaaaagagtataatattccaggcctgaagtggacacac
ttttactacggttgtctcatcaacaagggggacgttcaacggcaccaaaccaagcctaaa
ttcatggtgattgataccgttgaggtaaataccacaatgatgaagactattctcatccat
ggtaacacgctcgagattcccttcctcgagaatgtctgcttggaattgcagatccctcct
cgaatgactagcgacaaacgcccaacggtcgttttccgagagccccttgtctttgacata
cgatgcttctcttttgacaaacctgggaacacgggattctggataccccgtttcccacaa
gtttcgaaagtgcacttcgaccgaacgttcatgaacaccatgactttcattgagctgcag
gttgctgcagaggaggctaggaatatacccatcatggaggatagccaggagctgctccat
tggattagcctactggaggacgccgatcctcgaggtgttgcagtcgacgccttgactcag
tcgacggcatcatctttgttaacaacttcccccagacgacagtctagaacatctcaactc
tcgaacattgcgtctcctgatgatacccctacaaagcttcaccgtgccccaaagattgcg
ctcttcacaatttcggcttcatcagaactggcggaacccgaccatcccaacacgcagcca
tgctccactcaagagttgagtctacggcatcaaatccaggaagccgagggcctcaagaga
ggcagcactgaggattgtgtgaatcgagcagaaaacaagcgaccgaagtgcaacacattg
tcagcccctgcattttctggacacttgcattggtcaaggactcgtgcggaatcatctcaa
cgcaattcgttaacacgacaaccactctctaacgtttgcaacaatgtgtcgccagttagt
ctcacaccatctcagtcattttccctcgacagcacgaccaaacagaagcgatctgctagg
agcagctacaccgcaccattgtcattccccgtcatgactagcagggagattgcttcatct
cggacccttgtgtcttcaacttcatcgatgagggcggcgcgtctacaacccttccgccac
agatggtttatgtcagatcgtaggccaccgttgcaagatgaggaatcgtga
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