Variovorax sp. PMC12: C4F17_06760
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Entry
C4F17_06760 CDS
T05380
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C4F17_06760 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_06760 (nth)
Enzymes [BR:
vam01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C4F17_06760 (nth)
DNA repair and recombination proteins [BR:
vam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C4F17_06760 (nth)
Prokaryotic type
C4F17_06760 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
Ogg-HhH
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AVQ80672
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All DBs
Position
1:1462860..1463507
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AA seq
215 aa
AA seq
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MKKENIPLFFATLQAANPEPQTELEYTTPFELLAAVLLSAQATDVGVNKATRKLFPVANT
PQAILDLGVEGLEDYIKTIGLYRSKARHLIETCRMLVEQHGGQVPRTRAELEALPGVGRK
TANVVLNVAFGEATIAVDTHIFRMGNRTGLAPGKTPLEVELKLEKRVPLQYRLHAHHWLI
LHGRYVCVARKPRCWECAVATFCDYKPKTPAPKTA
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaaaacatcccgctcttcttcgccacgctgcaggcggccaacccggaaccc
cagaccgaactcgaatacaccacgcccttcgagctgctggccgccgtgctgctgtccgcg
caggccaccgacgtgggcgtgaacaaggccacgcgcaagctgttcccggtggcgaacacg
ccgcaggccatccttgacctcggcgtggaggggctggaggactacatcaagaccatcggc
ctgtaccgcagcaaggccaggcacctgatcgagacatgccgcatgctggtggagcagcac
ggcggccaagtgccgcgcacccgcgccgagctggaagcgctgcccggcgtcggccgcaag
accgccaacgtggtgctgaacgtggccttcggcgaggccaccatcgcggtcgacacgcac
atcttccgcatgggcaaccgcaccgggctcgcgccgggcaagacgccgctggaggtggaa
ctcaagctggagaagcgcgtcccattgcagtaccggctgcacgcgcatcactggctcatc
ctgcacgggcgctacgtctgcgttgcgcgcaagccgcgttgctgggaatgcgcggtcgcc
accttctgcgactacaagcccaagacacccgcgccgaagacggcctga
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