Variovorax sp. PMC12: C4F17_27490
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Entry
C4F17_27490 CDS
T05380
Name
(GenBank) RND transporter
KO
K18903
outer membrane protein, multidrug efflux system
Organism
vam
Variovorax sp. PMC12
Module
vam_M00698
Multidrug resistance, efflux pump BpeEF-OprC
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_27490
01504 Antimicrobial resistance genes [BR:
vam01504
]
C4F17_27490
Transporters [BR:
vam02000
]
Other transporters
Pores ion channels [TC:
1
]
C4F17_27490
Antimicrobial resistance genes [BR:
vam01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump BpeEF-OprC [MD:
M00698
]
C4F17_27490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
Motif
Other DBs
NCBI-ProteinID:
AVQ84848
LinkDB
All DBs
Position
1:complement(5847805..5849253)
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AA seq
482 aa
AA seq
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MLLAGCAVGPDYRTPDTPLPVSWKLEEPWRVSTPSDTADKGPWWRRFGDPQLDALQQQAL
AGSPTLAIANARLAQARATLAANAAGQYPQVGLGTRASRLRISANRPLTNYATPNSTTVQ
SDFALSLNASYEVDLAGRVQRTVEGAKASAEQSAADLQNTRLLLSADVASSYFNLRSTDV
ELDVLTRSIALQRRALELVTARHDLGAVSGLDVAQQQALLETTLTQVDVLRKQRSQYEHA
LATLTGTPAPSFSLPVDLREIRPPAVPLGVPSEILQRRPDVASAERAMAAANAQIGVATA
AFYPSIFISPTVGVDSRTIETLFNGPSLLWSLGVSATQVLFDGGRIRANVDFAKAGYEVT
VGNYRRTVLTAMQEVEDGITGLAALDSATTQAQAAVTAARRVLDMATSRYEGGASTYLDV
ITAQQSLLTVERQAAQLRGQRLLTAVFLVKALGGDWCGADEPGKAPASSCPAVGIDRTAK
AG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgctgctggcgggctgcgcggtcggccccgactacaggacgccggacacgccgctgccg
gtcagctggaagctggaggagccctggcgcgtgagcacgccgagcgacacagccgacaag
ggcccatggtggcgccgcttcggcgacccgcagctcgacgcgctgcagcagcaggcgctg
gccggcagccccacgctggccatcgccaatgcgcggctggcgcaggcgcgcgccacgctc
gcggccaatgcggccggccaatatccgcaagtcggcctcggcacccgcgcctcgcgcctg
aggatttccgccaaccgcccgctcaccaactacgcgacgcccaattcgacgaccgtgcag
agcgacttcgcgctgtcgctcaatgcgagctacgaagtcgacctggccggccgcgtgcag
cgcacggtagagggtgccaaggcgtcggcggagcaatcggcggcggacctgcagaacacc
cggctgctgctcagcgccgacgtggccagcagctacttcaacctgcgctcgaccgacgtc
gaactcgacgtgctcacccgctccatcgcgctgcagcgccgcgcgctcgagcttgtcacg
gcgcgccacgacctgggcgccgtatcgggcctggacgtggcgcagcagcaggcgctgctg
gagaccacgctgacgcaggtcgacgtgctgaggaagcagcgttcgcagtacgagcatgcg
ctggccacgctcaccggcacgccggcgcccagcttctcgctgccggtggacctgcgcgag
atcaggccgccggccgtgccgctgggcgtgccgtccgagatcctgcagcgccggcccgac
gtggcctcggccgagcgcgcgatggccgccgccaacgcgcagatcggcgtcgccaccgcg
gccttctacccgagcatcttcatctcgcccaccgtgggcgtggacagccgcacgatcgag
accctgttcaatggcccgagcctgctgtggtcgctgggcgtgtcggccacgcaggtgctg
ttcgacggcggacgcatccgcgccaacgtcgatttcgcgaaggccggctacgaggtcacc
gtgggcaactaccgccgcaccgtgctgaccgcaatgcaggaagtggaagacggcatcacc
gggcttgccgcgctcgacagcgcaacgacccaggcgcaggccgccgtcacggccgcgcgc
cgcgtgctcgacatggccaccagccgttatgagggcggcgcgtcgacctacctcgacgtg
atcaccgcgcagcagtcgctgctgacggtggaacgccaggccgcgcagctgcgggggcag
cggctgctgaccgcggtgttcctggtgaaggcgctgggtggcgactggtgcggcgcggat
gagcccggcaaggccccggcatcgtcgtgccccgccgtcggcatcgaccggactgcgaag
gccggttga
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