Vibrio aquimaris: FIV01_03665
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Entry
FIV01_03665 CDS
T06969
Symbol
ligA1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vaq
Vibrio aquimaris
Pathway
vaq03030
DNA replication
vaq03410
Base excision repair
vaq03420
Nucleotide excision repair
vaq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vaq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FIV01_03665 (ligA1)
03410 Base excision repair
FIV01_03665 (ligA1)
03420 Nucleotide excision repair
FIV01_03665 (ligA1)
03430 Mismatch repair
FIV01_03665 (ligA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vaq03032
]
FIV01_03665 (ligA1)
03400 DNA repair and recombination proteins [BR:
vaq03400
]
FIV01_03665 (ligA1)
Enzymes [BR:
vaq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FIV01_03665 (ligA1)
DNA replication proteins [BR:
vaq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FIV01_03665 (ligA1)
DNA repair and recombination proteins [BR:
vaq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FIV01_03665 (ligA1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FIV01_03665 (ligA1)
MMR (mismatch excision repair)
DNA ligase
FIV01_03665 (ligA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FIV01_03665 (ligA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
5_3_exonuc
Zf_2nd_IFT121
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QFT25535
UniProt:
A0A5P9CH13
LinkDB
All DBs
Position
797296..799305
Genome browser
AA seq
669 aa
AA seq
DB search
MPLDIQEQLNQLRETLHYHGVKYYVEDSPEIPDSEYDRLMRELLELEAKHPHLMSLDSPS
QRVGGQPLDGFQSVRHEIAMLSLDNAFDDDELDAFYKRMLDRLSVTELAQFCCEPKLDGL
AVSLLYEGGVLVQAATRGDGTTGENITENVRTIKSIPLKLNGDGWPPRIEVRGEVFMPKI
GFEQLNQNALKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVAEGGVLSQSH
YQRFVQLKSWGLPMCPETRQVSTLSEVKDYYLDILTRRDELAYEIDGVVIKVDDIAVQEQ
LGFVARAPRWAIAYKFPAQEEITVLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIARLKVKIGDSVIVRRAGDVIPQIVSYIQDRRPADAEEIVFPSQCPVCHSQIERLE
GEAVARCSGGLFCQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDREMVETPADLFKLSA
GMITVLDRMGPKSAQNVVDALNKAKSTTLARFLYSLGIREVGEATAVNLAQHFKTLDKIK
AATYEQLIEVPDIGGIVANHIIAFFAQEKNQLVIDDLCAQGVTWPDVEEPKHDIPQPLMG
KTVVLTGSLSQLSRNDAKAALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGVEIK
TEQDLVDLI
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgcctctagatattcaagaacagctcaatcaattgcgcgaaaccttacactaccatggt
gtgaaatactacgttgaagacagtcctgaaataccagactcagaatatgatcgcctgatg
cgtgagttattagagcttgaggctaagcaccctcatttgatgagtcttgattcccccagc
caacgagttggaggacagccacttgatggttttcaatcggtaagacatgagatagccatg
ttgtctctggacaatgcgtttgacgatgatgagcttgatgctttttataagcgtatgcta
gatcgtctctctgtcacggagttggcgcagttttgttgcgaacctaaactggacgggtta
gctgttagtctcttatatgaggggggtgttttggtccaagctgcgactcgtggcgatggc
acaaccggagaaaacattacagagaatgtccgcaccataaaatctatcccacttaaacta
aatggtgacggctggccacctcgcatcgaagttcgaggtgaagtgtttatgccaaagatt
ggctttgagcaacttaatcaaaacgcccttaaaaaaggggaaaaagtatttgttaaccct
cgcaatgctgctgctggcagcttgcgccagcttgactcccgaataacagcaacacggcct
ttgagcttttatgcatacagtgtgggggtagcagaaggtggtgtattatcacaaagtcat
taccaacgttttgtgcaactaaaaagctgggggctgcctatgtgcccggaaactcgtcaa
gtatcgactctttcagaagttaaagattattatctagacatcttgacgcgcagagatgaa
ttggcctatgaaatagatggtgttgttatcaaggttgatgatattgctgtgcaagagcaa
ttaggctttgttgccagagctcctcgctgggctattgcttataagtttccagctcaagag
gaaatcaccgttcttaatgatgttgaatttcaggtaggtcgaactggcgctattactcca
gtggctaagctagagcctgtctttgttggtggtgttaccgttagtaacgcaactttgcac
aatgccgatgaaattgcccgtctaaaagttaaaattggagatagcgttattgtgcgacga
gcgggggatgtgatcccgcaaattgtgtcctatatccaagaccgccgcccagcagatgca
gaagaaatcgtcttccctagtcaatgccccgtttgtcattctcaaattgagcgccttgaa
ggtgaagccgtggcaagatgttccggtggcttattctgtcaagcacaaagaaaagaagcg
ttaaagcactttgtatcgcgtaaggctctggatgtggacggattgggagaaaaggtgata
gagcagcttgtagatagggagatggtagaaacgcctgcagatctatttaaattgtctgcc
ggtatgattaccgttttagacagaatggggcccaagtcggcacaaaatgtggttgatgct
ttgaacaaggcgaaatcaaccacgctggctcgtttcctatattctcttggaattcgtgag
gtgggggaagcaacagcagtaaacctagcgcagcactttaaaactctcgataaaataaaa
gcggcaacttatgagcaattgattgaggtgcctgacataggaggcattgttgccaatcat
atcattgctttctttgctcaagagaagaatcaactggtaatagatgacttgtgcgctcaa
ggcgtgacttggcctgatgtcgaagagcctaaacatgatatcccccagccccttatgggc
aagacggttgtgttgacaggatccttgtctcagctatcacgaaatgatgccaaggcggcc
ttacaaaatctgggtgctaaagtgacaggaagtgtgagtaagaaaacggacattctcttt
gctggagaaaacgctggctcaaagctcgcgaaagcacaggaattgggcgttgagataaaa
acagagcaagatcttgttgatttaatataa
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