Vigna angularis (adzuki bean): 108342985
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Entry
108342985 CDS
T04660
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
var00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
108342985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108342985
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
108342985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
108342985
NCBI-ProteinID:
XP_017436442
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All DBs
Position
6:26528746..26539869
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AA seq
956 aa
AA seq
DB search
MGVPAFYRWLADRYPLSIVDVVEEDTAGGDGAVDVSKPNPNGMEFDNLYLDMNGIIHPCF
HPDGKPAPATYEDVFKIMFDYIDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSRRFRAAK
DAAEAEAEKERLREEFEGEMELLSSKDKPETYDSNVITPGTPFMAVLSVALQYYIQTRLN
FNPGWINTKVILSDSNVPGEGEHKIMEYIRSQRNLPGFNPNTRHCLYGLDADLIMLALAT
HEVHFSILREVITFPGQQDKCYQCGQIGHFAADCRGKPGEKPEDWNPVDDAPVHKKKYQF
LNIWVLREYLQYEMEIPNPPFEIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAVNLL
MHIYRKEFTAMGGYLTEAGEVFLERVEHFIQSVAVHEDQIFQKRVRIQQATEINEEMRAR
ARGEMPEEPRASLSDKVKLGEPGYKERYYAEKFGALNLEEIDKIKKDTVLKYVEGLCWVC
RYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPASSSSALP
EKYRDLMTDPSSPILEFYPADFEIDMNGKKYAWQGVAKLPFIDEKKLLSATSKLEGTLTV
EEQLRNSKMLDLLYVNRAHNLAPYILSYYQYSCQFSLHDRPAVPIDPSASSHGMNGYLWL
YERNVLRTVVSSPIKGLQDIEYNQVLNITYLNPRKHKHIPRPPNGVQMPKKILKAIDIKP
FPVLWHEENSGRRHGRERPQLHGAMAGPQLGEAAHRLVKNTLNIKPNNATYGFPEQLPGH
HAMNRVLRSPGPSGPGKYYTEDTSGYYGHHYNHQGMMPRPRYPVSSNGGHNDKQNFRIQD
RSQHHEQHYYNGRTGFHTFTMEEGPRPRPYAVPPPKTPVVMSSRPPNSGPTTNLQQQFVG
PPIPPPNWITRAPDTNGIYARHQEVAIGGAYDNKHMKKVYQVRSRQPQDMPEYGNQ
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccagcgttttaccggtggctcgcggatcggtacccgctctcgatcgtcgac
gttgtggaggaggacaccgccggcggcgacggcgctgttgatgtttctaaacctaatccc
aatggcatggagttcgacaacttgtacttggacatgaacggcatcattcacccctgtttt
catcctgacggcaagccggcacctgctacctatgaagatgtattcaaaataatgtttgac
tacattgaccatctattttcattggttcgcccaaggaagcttctttatctcgcaattgac
ggtgttgcaccaagagccaaaatgaatcagcaaagatcacggcgattccgagctgcaaaa
gatgcagctgaggctgaagctgaaaaggaaagactcagggaagaatttgagggtgagatg
gaactcttgtcttctaaagacaagcctgaaacctatgactcaaatgtcattacccctggc
actccatttatggcagtgttatcagtggctcttcagtattatatacagactagattaaat
ttcaaccctggctggataaatacaaaggttatactttctgattcaaatgttcctggtgag
ggagaacataaaataatggaatacatacgatcacaacgtaaccttccaggatttaatcca
aatactcgtcactgtttgtatggattggatgctgatttgattatgttggccttagccaca
catgaggttcatttctccatattaagggaggtaattactttccctggacaacaggacaag
tgttatcagtgtgggcaaattggccattttgcagctgattgtcgtggtaagccaggtgag
aaacctgaggactggaatccagttgatgatgccccagttcacaagaagaaatatcagttt
cttaacatctgggtgctgcgtgaatatctgcaatatgaaatggagatccccaaccctcct
tttgagattgactttgaacgcatagtggatgattttgtatttctatgcttctttgttggc
aatgactttcttcctcacatgccaacattagaaatacgtgagggagctgtcaacttattg
atgcatatttatagaaaggaattcactgccatgggtggttatcttactgaagcgggtgag
gttttcttagagagagtggagcattttattcagtctgttgctgttcatgaagatcaaata
tttcagaaacgagttcgcattcaacaggctacagaaattaatgaagagatgagagctagg
gcaagaggagaaatgcctgaagaaccacgagcatctctttcagacaaggttaagttagga
gagcctggatacaaggaaaggtattatgcagaaaaatttggtgcattgaatctggaggag
atcgacaaaatcaagaaagatacagtcttgaaatatgtagaaggcctttgttgggtttgt
cggtattactaccagggtgtctgctcatggcaatggtactacccataccattatgctcct
tttgcttctgatcttaaagatctagctgatctggagataacattttttttgggagaacca
tttaagccatttgatcaactaatggggaccctacctgcatcaagttcaagtgcactgcct
gaaaaatacagggatttgatgactgatccttcatcacctattcttgaattctaccctgct
gattttgagattgatatgaatggcaaaaaatatgcatggcagggcgttgccaagttgcca
ttcattgatgagaaaaaattgctctctgccacaagcaagcttgaaggaacattaacggtg
gaggaacagctccgaaatagtaagatgcttgatttgctttatgtcaacagagcgcataat
ttggctccatatatcttatcgtactaccaatattcttgtcaattctctctgcatgacaga
cctgctgtacctattgatccaagtgctagcagtcatggtatgaatggatacctctggttg
tatgaaagaaatgtgctcagaaccgttgtatcctctcccatcaagggattgcaagacatc
gagtacaatcaagttttaaatattacctatcttaatcctcgtaaacataaacatattcca
agacctccaaatggtgtacaaatgccaaaaaagatattaaaagccattgatattaaacct
tttcctgtgttatggcacgaagaaaatagtggtcggcgtcatggcagagaaagaccacaa
ctacacggagcaatggctgggcctcaactgggagaagcagcacatcgtcttgtgaagaac
acccttaatattaaaccaaataacgcaacatacggattcccagagcagcttccaggccat
catgcaatgaacagggtgcttagatcaccaggaccctctggacctggtaaatattatacc
gaggacacaagtggttattacggacatcattacaatcaccagggcatgatgcctagacct
agatatccagtctcatccaatggtggacataatgacaaacagaattttaggatacaggat
aggtcacagcatcatgaacagcattactacaacgggagaactgggttccatacttttaca
atggaggaaggcccaagaccaaggccatatgcagtgcctccaccaaagacacctgtggtg
atgtcatcaaggccacccaattcaggaccaacaactaatctgcaacagcaatttgtgggt
cctcctataccacctccaaactggattactagagcacctgatacgaacggaatatatgct
aggcatcaagaagttgcaattgggggagcttacgataataagcacatgaagaaggtgtac
caagttagaagtcggcaaccccaagatatgccagagtacgggaatcaatag
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