Vigna angularis (adzuki bean): 108345882
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Entry
108345882 CDS
T04660
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
var00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
108345882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108345882
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
108345882
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
108345882
NCBI-ProteinID:
XP_017440208
UniProt:
A0A0L9VJ43
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Position
3:complement(14646951..14659460)
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AA seq
933 aa
AA seq
DB search
MGVPAFYRWLADRYPLSIADVVEDEPAVGDDGVPLPIDASKPNPNGMEFDNLYLDMNGII
HPCFHPDGTPAPATYDDVFKSVFDYIDHLYLLVRPRKLLYLAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLRKEFEGEANILSSKDKRETSDSNVITPGTQFMAALSVALQYYVQ
TRLNHNPSWRNTKVILSDSNSPGEGEHKIMEYIRLQRNLPCFNPNTRHCLYGLDADLIML
SLATHEVHFSILREVVTLPGQQDKCFLCGQVGHFAADCQVENFDTPDDSPIHKKKYQFLN
IWVLREYLQFELEIPKPPFEIDFERVVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMH
IYRKEFSVIGGYLTDAGEVFLDRVERFIQFIAIHEDQIFQKRVCIQLAAENNEEIRARAR
GEMPREPRASLVDKVKLGDPGYKERYYAEKFGVSNLEEIDKVRKDTVLKYVEGLCWICQY
YYQGVSSWKWYYPYHYAPFASDFKDLTDQEITFLPGEPFKPFDQLMGTLSASSSSALPKK
YRDLMTNPSSPIFHFYPADFEIDMNGKRFTWQGVAKLPFIDEKKLLAATRKIEDTLTEEE
QFRNSVMLDLLYVNHAHDLASHILSYYHVSSQLAPHERCVRPIDTNASSGGMNGYFWLCE
RNVFSSVVSSPIRGLQDVESNQVLNITFLNPRKHNHIPTLPDGVVIPNKVLKATDIKPFP
VLWHEENIGQRMQARERPRVSGAIAGYQLGEAAHRLVKNTLNIKSNDTSHGLLEQPPVHH
KTNRLRSTGYGKYYGENASGYNGQYNHHGMMTTPKYGGHSDRQHFKIRDRLQREEQFHNV
KTEFSTLSMDERERPRSLRLPSSRPIANLQPRFVQNMDPSIPSTKWMTKPQPTNGMPTRN
QEAALGPTTYDKQTKKVYQVKIRQIDTPESAKQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccagcgttttaccggtggctcgccgaccgttacccgctttccatcgccgac
gtagtagaggatgaacccgctgttggcgacgacggcgttccgttgcctatcgacgcgtct
aaacctaaccccaacggaatggaattcgataacttgtacttggacatgaacggcattatc
cacccttgttttcaccccgatggcacgccggcacctgctacctatgatgatgtgtttaaa
tcagtatttgattacattgaccatctctatttgttggttcgtccaaggaagcttctgtac
cttgcaattgatggtgttgcaccacgagccaaaatgaatcagcaacgttctcggcgtttc
cgagctgctaaagatgcagctgaggctgaagctgaagaggaaaggctgaggaaagaattt
gagggtgaggcaaacattttgtcttctaaagacaagcgtgagacttcagactctaatgtc
attacccctggaactcaatttatggcagccttgtcagtggctctccagtattatgtacag
actagattgaaccacaatcctagctggcggaatacaaaggttatattgtctgattcaaat
tcgcctggtgaaggagaacataaaataatggaatacatccggttacaacgcaaccttccc
tgtttcaatccaaatactcgacattgtttgtatggattggatgccgatttgattatgctc
tccttagctacacatgaggttcacttctcaatattgagggaggtagttactttacctggt
caacaggataagtgttttttgtgtggccaagttggccattttgcagcggattgtcaagtt
gagaactttgatactcctgatgatagtccaattcacaagaagaaatatcagtttcttaac
atctgggtgctgcgtgaatatttgcaatttgaattggagatacccaaacctccatttgag
atcgactttgaacgagttgtggatgattttgtatttctatgcttctttgttggcaatgat
ttcctcccacatatgccaacattggagatcagggagggggctataaatttattgatgcat
atatacagaaaggaattttctgtcataggtggttatcttactgatgcaggcgaggttttc
ttagatagagtggaacgatttatccagtttattgcgattcatgaagatcaaatctttcag
aaacgagtctgcattcagctggctgcagaaaataatgaagagattagagcaagggcaaga
ggagaaatgcctcgagaaccccgagcctcccttgtggataaggttaaattaggagatcct
ggatacaaggaaagatattatgctgaaaagtttggtgtatcaaatcttgaggagattgat
aaagttaggaaggataccgtcttgaaatatgtggaaggcctttgttggatttgtcagtat
tattatcagggtgtcagctcatggaagtggtattacccatatcattatgcaccctttgct
tctgattttaaagatctaactgatcaggaaataactttcttgccgggagaaccatttaaa
ccgtttgatcagctcatgggcaccctatctgcttcaagttcaagtgcactgcctaagaaa
tatagagatttgatgaccaatccttcgtcacctatttttcacttttaccctgctgatttt
gaaattgatatgaatggaaaacgatttacatggcagggtgttgccaagctgccatttatt
gatgagaagaaattgcttgctgccacaagaaagattgaagacacattaacggaggaagaa
cagtttcggaacagtgtgatgcttgatttgctatatgtcaatcatgcacatgatttggct
tcacatatcttatcttattatcatgtttctagtcaactagccccacacgaaagatgtgtt
aggccaattgacacaaatgctagtagtggtgggatgaatggatatttttggttatgtgaa
agaaatgttttcagctctgttgtatcttctcccatcagaggattgcaagatgttgaatct
aaccaagtcttaaatattacatttcttaaccctcgtaaacacaatcatatcccgacactt
ccagatggtgtagtaatacccaacaaggtattaaaagccactgatattaaaccttttcct
gtgctgtggcatgaggagaatattggtcagcgaatgcaagcaagagaaaggccacgagta
tctggagccatcgctggatatcaactgggagaagcagctcatcgacttgttaagaacacc
ctcaacattaaatcaaatgacacatcccatggattgctggagcaacctccagtccatcat
aaaacgaacaggcttcgatcaactggatatggaaaatattatggtgagaacgcaagtggt
tataatggacaatataatcaccatggcatgatgactacaccaaaatatggtggacatagt
gacagacaacattttaagatacgcgataggttacagcgtgaagaacagttccacaatgtg
aaaactgagttttctactctatcgatggatgaaagagagagacccaggtcattaaggctt
ccaagttccagaccaatagccaatttacaaccccggtttgtgcagaacatggatccttca
ataccatctacaaaatggatgactaaaccacaacctacgaatggcatgcctactaggaat
caagaagctgcattggggccaacaacttatgataagcagaccaagaaggtttaccaagtt
aaaatacgtcagatagatacaccagaatctgcgaagcaatag
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