Vibrio astriarenae: GT360_04055
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Entry
GT360_04055 CDS
T06574
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vas
Vibrio astriarenae
Pathway
vas03030
DNA replication
vas03410
Base excision repair
vas03420
Nucleotide excision repair
vas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GT360_04055 (ligA)
03410 Base excision repair
GT360_04055 (ligA)
03420 Nucleotide excision repair
GT360_04055 (ligA)
03430 Mismatch repair
GT360_04055 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vas03032
]
GT360_04055 (ligA)
03400 DNA repair and recombination proteins [BR:
vas03400
]
GT360_04055 (ligA)
Enzymes [BR:
vas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GT360_04055 (ligA)
DNA replication proteins [BR:
vas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GT360_04055 (ligA)
DNA repair and recombination proteins [BR:
vas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GT360_04055 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GT360_04055 (ligA)
MMR (mismatch excision repair)
DNA ligase
GT360_04055 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GT360_04055 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
DZR_2
P16-Arc
Motif
Other DBs
NCBI-ProteinID:
QIA62734
UniProt:
A0A7Z2YD34
LinkDB
All DBs
Position
1:837244..839253
Genome browser
AA seq
669 aa
AA seq
DB search
MSQTPSLRLNELRETLHYHAVKYYVEDSPELPDAEYDRLMRELLELEAAHPELVTIDSPS
QRVGGAPLAGFESVAHELPMLSLDNAFDDAELDGFAKRANERLMGEKVEQFCCEPKLDGL
AVSLLYENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGNDWPTRIEVRGEVFMPKA
GFERLNEQALKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGIVEGMALSESH
YERFLQLKGWGLPMCPETQRLDSLEQVKQYYTDILDKRDALPYEIDGVVIKVDSIAQQES
LGFVARAPRWAIAYKFPAQEELTTLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLH
NADEIARLGVKIGDCVIIRRAGDVIPQIVSVVTERRPENAQEIVFPTQCPVCQSQVERVE
GEAVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDREMVETPADLFKLSA
GVITVLDRMGPKSAQNVVNALDKSKQTTLPRFLYSLGIREVGEATAANLAQHFFTLDAIM
AASHEKLLQVSDVGEIVASHITAFFAQEKNQLVIRDLIEQGVIWADVAEMDESTPQPLAG
LTVVLTGSLSKLTRSDAKAALQALGAKVTGSVSKKTDMLFAGENAGSKLAKAQELGIEIK
TEDDLIAML
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaacacctagcttacgactcaatgagttacgtgaaacacttcactatcatgct
gtgaaatattacgtcgaagacagcccagaactgcctgatgcagagtatgaccgtttaatg
cgtgagctacttgagttggaagccgcccacccagaactggtgacaatcgattcgccaagc
caacgtgtgggtggcgcaccgctggctggctttgagtcggttgctcatgaattgccaatg
ttatctttggataatgcttttgatgatgcagaactcgatggatttgccaaaagggccaat
gagcgcctaatgggtgaaaaagtcgagcaattttgctgtgaaccaaaactggatggcctc
gctgtcagcctgttatatgaaaatggggtgcttgttcaggctgcgacacgaggtgatggc
acaacaggggaaaacatcactgagaatgtgcgaacaatcagcgcgattccccttaaactg
cagggcaatgattggccgactcgtattgaggttcgtggtgaagtattcatgccaaaagcc
ggttttgaacgcctcaatgagcaggctctgaagaagggcgaaaaagtctttgttaaccca
cgtaacgccgctgctggtagcctgcgtcagttagattctcgcattaccgcgacgcgccct
ttgagtttttatgcatacagcgtgggaatcgttgaagggatggcgttgtcagagagtcat
tacgagcgttttcttcagctcaaaggttggggcttaccaatgtgccctgaaacacagcgc
ttagacagccttgagcaagtaaaacagtactacaccgatattttagataagcgtgatgcg
ttgccttatgagatagatggtgtcgtcattaaggttgatagcattgcacagcaagagtca
ttgggctttgtggcgagagcgccgcgctgggctattgcttataagtttccagctcaagag
gagttaaccactctcaatgatgtggagtttcaagttggacgtacaggggcgattacgcct
gttgccaagctggaacctatttttgttggcggtgtgacggtcagtaatgcaacgctgcac
aacgctgatgaaatagcacgcttgggggtgaaaattggtgattgtgtcattattcgccgt
gctggtgatgtaatacctcaaattgtctcagtggtgacagagcgtcgccctgaaaatgct
caagaaatcgtttttccaacgcagtgccctgtgtgccaatctcaggttgaacgtgttgag
ggcgaggctgtcgctcgttgttctggtggtcttgtgtgtcaagctcagcggaaagaggct
ctaaagcatttcgtttcgcgcaaagcactggatgtcgacggtcttggtgaaaaagtgata
gagcaactggtggaccgtgaaatggtcgaaacacctgcggatctgtttaagctctctgcc
ggagtcatcacggttctcgaccgaatggggccaaaatctgcgcaaaatgtggttaatgct
ctagataagtcaaaacagaccacactacctcgatttctgtattcattaggtattagagaa
gtaggtgaagcaacggcagcaaacttagcacaacacttctttacacttgatgccattatg
gcggcatcacatgagaaattgcttcaagtgagcgatgtcggtgagattgtcgcaagtcat
attaccgctttctttgctcaagaaaagaatcagctagtgattcgagatttgattgagcaa
ggggtgatttgggcagatgttgcagagatggatgagtcgactcctcagcccttagcggga
ctgacggttgtattgacgggttctctatcaaagttgacaagaagtgatgcaaaagccgca
ctgcaggccttaggtgccaaagtgacggggagtgtctcgaagaaaacggatatgttgttt
gctggtgagaatgccgggtcaaagttagcaaaagcacaggaacttggtatagaaatcaag
acggaagatgacttgattgccatgctataa
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