Variovorax sp. 38R: IG196_13545
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Entry
IG196_13545 CDS
T10235
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
vav Variovorax sp. 38R
Pathway
vav03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IG196_13545 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vav03400
]
IG196_13545 (nth)
Enzymes [BR:
vav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
IG196_13545 (nth)
DNA repair and recombination proteins [BR:
vav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
IG196_13545 (nth)
Prokaryotic type
IG196_13545 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QOF81337
UniProt:
A0A7L8SN75
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All DBs
Position
complement(2972719..2973366)
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AA seq
215 aa
AA seq
DB search
MKKSDIPLFFATLQAANPEPRTELEYTTPFELLAAVLLSAQATDVGVNKATRRLYPVANT
PQAILDLGVEGLESYIKTIGLYRSKAKHLIEACRMLVELHGGEVPRTRAELEALPGVGRK
TANVVLNVAFGEETIAVDTHIFRIGNRTGLAPGKTPLDVELKLEKRIPPEYRLHAHHWLI
LHGRYVCVARKPRCWECAVSTFCAFKPKTPAPKTA
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaatccgacatccccctcttcttcgcgaccctgcaggccgccaaccccgagccg
cgcacggagctcgaatacaccacgcccttcgagctgctggccgcggtgctgctgtcggcg
caggccaccgacgtgggggtgaacaaggcgacgcgccggctctatccggtggcgaacacg
ccgcaggcgatcctcgacctgggggtcgaagggctggagtcgtacatcaagacgatcggg
ctgtaccgcagcaaggccaagcacctgatcgaggcctgccggatgttggtcgagctgcac
ggcggcgaggtgccgcgcacgcgcgccgagctcgaggcgctgccgggcgtcgggcgcaag
acggcgaatgtggtgctcaacgtggccttcggcgaggagaccatcgcggtcgacacgcac
atcttccgcatcggcaaccgcaccgggctcgcgcccggcaagacgccgctggacgtggaa
ctcaagctcgaaaagcgcatcccacccgagtaccgcctgcacgcacaccactggctgatc
ctgcacgggcgctatgtctgcgtggcgcgcaagccgcgctgctgggaatgcgcggtctcc
accttctgcgcgttcaagcccaagacgccggcccccaagaccgcctga
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