Variovorax sp. PAMC28562: H7F36_16480
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Entry
H7F36_16480 CDS
T10649
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vax Variovorax sp. PAMC28562
Pathway
vax03030
DNA replication
vax03410
Base excision repair
vax03420
Nucleotide excision repair
vax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H7F36_16480 (ligA)
03410 Base excision repair
H7F36_16480 (ligA)
03420 Nucleotide excision repair
H7F36_16480 (ligA)
03430 Mismatch repair
H7F36_16480 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vax03032
]
H7F36_16480 (ligA)
03400 DNA repair and recombination proteins [BR:
vax03400
]
H7F36_16480 (ligA)
Enzymes [BR:
vax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H7F36_16480 (ligA)
DNA replication proteins [BR:
vax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H7F36_16480 (ligA)
DNA repair and recombination proteins [BR:
vax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H7F36_16480 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H7F36_16480 (ligA)
MMR (mismatch excision repair)
DNA ligase
H7F36_16480 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H7F36_16480 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Zn_Ribbon_TF
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QNK72768
LinkDB
All DBs
Position
3505252..3507360
Genome browser
AA seq
702 aa
AA seq
DB search
MTKRDQAAKEAERDPANEAAALTEKLRHHAHLYYVLDAPELPDAEYDKLFQRLQAIEAEH
PALRTPESPTQRVGGKVLEGFVKIRHSVPMLSIRTETDITSTGASAFDARVRRELGLAED
AAQIAYVCELKFDGLAINLRYEHGVLVQAATRGDGEVGEEVTQNIRTVQQIPLRLAGEAP
PPPVVEVRGEVYMKRADFDALNERQRGKIAAGQKNEKVFVNPRNAAAGAVRQLDPAIAAA
RPLSFFAYGLGEVSPPEQGGPDCPTQFDWLQQFHSWGFPVATQTTRASGAVELIAFHENI
GRQRDALPYDIDGVVYKVDSVQLQRRLGFVSREPRWAVAHKYPAQEQLTTVQAIEIQVGR
TGKLTPVAKLAPVFVGGVTVTNATLHNEDETRRKDVRVGDTVIVRRAGDVIPEVVRLAPD
SAALPEEERGPVFTMPHKCPICGSDAVREEDEVDYRCTGGLFCAAQRKEAILHFAARRAV
EVEGLGDKLVEQLVDANLIRTLPDLYKLGFTTLVGLDRMAEKSARNIVDALEKSKETTLP
RFLFGLGVRHVGESTAKDLAKHFGKLDSIMDATEAELLEVNDVGPVVAQSLRTFFDQPHN
REVVEQLRACGLTWKEGEPAPRIALPLAGKTFVITGTLPTLSRDEAKDLLETAGAKVAGS
VSKKTDYVVAGEEAGSKLEKARTLGVAVIDEAAMLALLTSAA
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagcgcgatcaggccgcaaaggaggccgaacgcgaccccgcgaatgaagccgca
gcgctgactgaaaagctgcgccatcatgcgcatctgtactacgtgctggacgcgcccgag
ctgcccgacgccgagtacgacaagctgttccagcggctgcaagcgatcgaagccgaacat
cccgcgttgcgaacgcccgaatcgccaacgcagcgcgtgggcggcaaggtgctcgaaggc
ttcgtcaagatccgccatagcgtgccgatgctgtcgattcgtaccgagaccgacatcacc
tcgaccggcgccagcgctttcgatgcgcgcgtgcggcgcgaactcggcctggccgaagac
gcggcgcagatcgcttatgtgtgcgagctcaagttcgacggcctggccatcaacctgcgc
tacgaacacggcgtgctggtgcaggccgcgacgcgcggcgacggcgaagtgggcgaagag
gtcacgcagaacatccgcaccgttcagcagattcctctgaggcttgccggcgaggcgcca
ccgccaccggtggtcgaagtgcgaggcgaggtctacatgaagcgcgccgatttcgacgca
ctgaacgagcgccagcgcgggaagatcgcggccggccagaagaacgagaaggtgttcgtc
aatccgcgcaacgccgctgccggcgcggtgcggcaactcgatcctgccatcgcagccgcc
cggccattgagcttcttcgcgtacggcctgggtgaggtctcgccaccggaacaaggcggc
cccgattgcccgacgcagttcgactggctgcagcagtttcattcgtggggatttccggtc
gcgacgcagacgacgcgtgccagcggtgccgtcgaacttatcgcctttcacgagaacatc
gggcggcagcgcgatgccttgccatacgacatcgacggtgtggtctacaaggtcgacagc
gtccagctgcagcggcggctgggcttcgtgtcgcgcgagccgcgctgggccgtggcacac
aagtacccggcacaggagcagttgacgacggtgcaggcgatcgagatccaggtcgggcgc
accggcaagctcacgccggtcgccaagctggcgccggtgttcgtcggcggcgtgacggta
accaatgccacgctgcacaacgaagacgaaacgcggcgcaaggatgtgcgtgtcggcgac
acggtgatcgtgcgccgcgcgggcgatgtgattccggaagtcgtgcgactggcgcccgac
agcgctgctttgcctgaagaggagcgcggccctgtcttcaccatgccgcacaagtgcccg
atctgcggctccgacgcggtgcgcgaagaggacgaagtggactatcgctgcaccggcggc
ttgttctgcgcagcccagcgcaaggaagcgatattgcacttcgcggcccgccgcgcggtc
gaggtcgaaggcttgggcgacaagctggtcgagcagctggtcgacgccaatctcatccgt
accttgcccgacctgtacaagctcggtttcaccacgctggtcgggctcgaccgcatggcg
gaaaagtcggccaggaatatcgtcgatgcgctcgaaaaatcgaaagagacgaccttgcca
cggttcttgttcgggctgggcgtgcggcacgtcggcgagagcaccgcgaaggatctggcc
aagcacttcggcaagctcgactcgatcatggacgccaccgaggctgagctgctcgaagtg
aacgatgtcggcccggtggtcgcgcaaagtctgcgaacgtttttcgatcaaccgcacaac
cgcgaagtggtcgagcagcttcgcgcttgcggcctgacctggaaggagggcgagcccgcg
ccgcgcattgcgctgccgttggctggcaagacttttgtcatcaccggaacactgccgacc
ctgagccgcgatgaggccaaggacctgctggagacggcaggcgccaaagtggcgggctcg
gtgagcaagaaaaccgactatgtcgtcgccggcgaagaggcggggagcaagcttgagaag
gcgcggacgctcggtgtcgcggtgatcgacgaagcggcgatgctcgcgctgttgacaagc
gcagcctga
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integrated database retrieval system
