Verrucomicrobia bacterium IMCC26134: IMCC26134_01770
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Entry
IMCC26134_01770 CDS
T03830
Name
(GenBank) hypothetical protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vba
Verrucomicrobia bacterium IMCC26134
Pathway
vba03030
DNA replication
vba03410
Base excision repair
vba03420
Nucleotide excision repair
vba03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IMCC26134_01770
03410 Base excision repair
IMCC26134_01770
03420 Nucleotide excision repair
IMCC26134_01770
03430 Mismatch repair
IMCC26134_01770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vba03032
]
IMCC26134_01770
03400 DNA repair and recombination proteins [BR:
vba03400
]
IMCC26134_01770
Enzymes [BR:
vba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IMCC26134_01770
DNA replication proteins [BR:
vba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IMCC26134_01770
DNA repair and recombination proteins [BR:
vba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IMCC26134_01770
NER (nucleotide excision repair)
GGR (global genome repair) factors
IMCC26134_01770
MMR (mismatch excision repair)
DNA ligase
IMCC26134_01770
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IMCC26134_01770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AKC83848
UniProt:
A0A0E3YVY1
LinkDB
All DBs
Position
472471..474582
Genome browser
AA seq
703 aa
AA seq
DB search
MEDAQALARLKELRREIARHDELYFRKAAPVISDYEYDQLKAELRALEARASDGQTLAGE
TLGDDRSAGFTSHRHLEPMLSLTKAYSDEEVAAFVARVEAKLGRGAVAFRVEPKYDGLAV
SLTYEQGRLVRAVTRGNGMEGDDITANARLLVRGLAERLGEGGSDGGAGGEAASWSGPER
VELRGEIYMGTAEFKRINAEREAAGEDLFAHPRTVAVGTIRALEAGEVADRKLELVCYGW
GAWTPAVDRPATLAEFRAKLAAWGLPVVGIEKVVTDAAGLSTAVAEVRAAAPGLGLPVDG
VVLKVERVSQQEELGLAPGAPRWALARKFEPERAVTRLQGITLQVGRTGVVTPVAELAPV
ELAGSTIARATLHNAGEIARRDLRVGDWVLVEKAGEIIPAIVGVEMARRTGAETPYVFPE
SCPSCAEKLTQAAGEVGYRCANRACPAQVARRIGHFATPAALDIAGLGPGVIDALVARGL
ARSPADLYRLRAGEWAALPGLGARSAAKLMAGLAASRETAQANGARLIYALGLPGVGEGA
ARRLTEVVTGLGALAALEAEALRRPESEGGAGLGEAVARELVEYLQRPDVRAELAALRAA
DIGGSWTKKPSPIPSDTGSDVLRGHVVVVTGTFTHWTRAEATRRLTAAGATVGADVTRQT
TLLIVGAEPGSKLVKARERGIEVIDEAELIRRLGTGMKSEATH
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgcgcaggcgctggcgaggttgaaggaactccggcgcgagatcgcacggcat
gacgagttgtatttccgcaaggcggcgccggtgatcagcgattacgaatacgatcagttg
aaggcggagctgcgggcgctggaggcgcgggcgtcggatgggcagaccttggctggcgaa
acactgggtgatgatcgctcggcgggttttaccagccaccggcatctcgaaccgatgctg
agcttaaccaaggcttattcggacgaggaagtggcggccttcgtggcgcgggtggaggcg
aagctcgggcgtggagcggtggcgtttcgcgtggagccgaagtatgacggtctggcggtg
agcctcacttacgagcagggccgtctggtgcgggccgtgacgcgcggcaacggcatggaa
ggcgacgacatcacggcgaatgcgaggttgctggtgcgcggcttggcggagcgactgggt
gagggaggcagcgacggcggcgcaggcggtgaagctgcgtcgtggagcgggccggagcgg
gtggagttgcgcggcgagatttatatgggaacggcggagtttaagcggatcaacgcggag
cgggaggcggcgggggaggatttgttcgcgcatccgcgcactgtggcggttggcacgatc
cgggcgctggaggcaggcgaggtggcggaccggaagctcgagctggtttgctatggctgg
ggcgcgtggactccggcggtggaccgtccggcgaccctcgctgagtttcgcgccaagctg
gcggcgtggggcctgccggtagtgggtattgagaaagtggtgacggacgcggccgggttg
agcacggcggtggcggaagtgcgggcggccgcgcccgggctgggcctgccggtggacggg
gtggtgttgaaggttgagcgcgtctcgcagcaggaggaactcgggctggcgccgggcgcc
ccgcgttgggcgctggcgaggaagttcgaaccggagcgggcggtgacgcgattgcagggc
atcacgctgcaagtcggacgcaccggggtggtgacgccggtcgcggagctggccccggtg
gagctggcgggttcgaccatcgcgcgggcgaccttgcacaacgccggcgagatcgcgcgg
cgcgacctgcgggtgggggattgggtgctggtggagaaggcgggggagatcatcccggcc
atcgtgggcgtcgagatggcgcgccgcaccggcgcggagacgccgtatgtgtttccggag
agttgtccgagttgtgcggagaagctcactcaggcagcgggcgaggtgggctatcggtgc
gcgaaccgggcctgcccggcgcaggtggcgcggcggatcggtcattttgcgacgccggcc
gcgctcgatatcgcggggcttggcccgggggtgatcgacgccctggtggcgcgcggcctg
gcgaggagtccggccgacctttatcgattgagggcaggggaatgggcggcgttaccggga
ctcggagcgcgctcggcggcgaagctcatggcggggctcgcggcgagccgcgaaacggcg
caggcgaacggggctcgtttgatctacgcgctgggtttgcccggggtgggtgagggggcg
gcgcggcggttgaccgaggtggtgacgggcctgggcgcgctggctgccttggaagctgag
gccctgcgccggccggagagcgagggtggtgcgggcttgggcgaggcggtggcccgggag
ctggttgagtatttgcaaaggccggacgtgcgtgccgagttggcggcgctgcgagcggcg
gacatcgggggttcttggacgaaaaagccctctcccataccttccgacacgggatcggac
gtgttgcgtggccatgtggtggtggtgacggggacgttcacgcactggacccgtgcggag
gcgactagacgcctgaccgctgccggtgccacggttggggcggacgtgacgcgccaaacc
actctattgatcgtcggtgccgagccgggctctaagctggtcaaggcccgtgaacgaggc
attgaggtgatcgacgaagccgagttgatcaggcgcttaggaaccggaatgaaaagcgaa
gcgactcattga
DBGET
integrated database retrieval system
