Variovorax boronicumulans: CKY39_04585
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Entry
CKY39_04585 CDS
T05068
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
vbo
Variovorax boronicumulans
Pathway
vbo00300
Lysine biosynthesis
vbo00550
Peptidoglycan biosynthesis
vbo01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
CKY39_04585
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
CKY39_04585
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vbo01011
]
CKY39_04585
Enzymes [BR:
vbo01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
CKY39_04585
Peptidoglycan biosynthesis and degradation proteins [BR:
vbo01011
]
Precursor biosynthesis
Amino acid ligase
CKY39_04585
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
Ni_insertion
Motif
Other DBs
NCBI-ProteinID:
ATA52572
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All DBs
Position
1015955..1017511
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AA seq
518 aa
AA seq
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MLTLTSPTTAAFWLKERVQGALQADSRAVVPGDAFIAWPGAATDGRQHVAAALAQGAVAC
LVEHEGVDAFGFDGDERIVSYPGLKAATGPIAAAFYDNPSAQLDLLAVTGTNGKTSTAWW
LAESLSTLRAAGGVRAMRPDGTTERGAPSPCAVVGTLGIGVPPELTYTGLTTPDPVMLQR
ALRDFVTEGFGACAIEASSIGIAERRLDGCRIAVAVFTNFTQDHLDYHGSMDAYWQAKAE
LFRWPGLRAAVINIDDMHGASLCANLLDAGIGALDVWTVSAGGKPARLVARDIGYDAQGL
QFTVAEHGSTAPAERLATGLIGQYNVANLLGVLGTLRALGLTLAQAVAACAHLSSVPGRM
DRVQPTEGAPLAVVDYAHTPDALDKALAGLRPLAKQRGGALWCVFGCGGNRDPIKRPLMA
AVAERQADHVVLTSDNPRNENPDAIISQALRGFTRVEAARVQVDRARAIAETIAQAAPQD
VVLIAGKGHEEWQEIAGQRLPFSDKTHALEALAKRGAA
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgctgacactcacttcccccaccaccgccgcgttctggctcaaggagcgcgtgcagggc
gcactgcaggccgacagccgcgcggtcgtcccgggcgatgccttcattgcctggcccggt
gccgccaccgacggccgccagcacgtggcggccgcactggcgcagggcgccgtggcctgc
ctcgtcgagcacgagggcgtggacgccttcggtttcgacggcgacgagcgcatcgtgagc
taccccggcctcaaggccgccaccggcccgatcgccgccgccttctacgacaacccctcg
gcgcagctcgacctgctggccgtgaccggcaccaacggcaagacctccaccgcgtggtgg
ctggccgagtcgctgtccacgctgcgcgcggccggcggcgtgcgcgccatgcgccccgac
ggcaccaccgagcgcggcgcgccgtcgccctgcgccgtggtcggcactctgggcatcggc
gtgccgcccgaactcacctacaccggcctgaccacgcccgaccccgtgatgctgcagcgc
gcgctgcgcgacttcgtcaccgaaggcttcggcgcctgcgccatcgaggcctcgtccatt
ggcatcgccgagcgccggctcgacggttgccgcatcgcggtcgccgtgttcaccaatttc
acgcaggaccacctcgactaccacggcagcatggacgcctactggcaggccaaggccgag
ctgttccgctggcccggcctgcgcgccgcggtgatcaacatcgacgacatgcacggcgcc
agcctgtgcgccaacctgctcgacgccggcatcggcgcgctcgacgtctggaccgtctcc
gccggcggcaagcccgcgcggctcgtggcgcgcgacatcggctacgacgcgcagggcctg
cagttcaccgtggccgagcacggcagcacggcgccggccgaacggcttgcgaccgggctc
atcggccagtacaacgtcgccaacctgcttggtgtgctcggcaccctgcgtgcgctgggc
ctcacgctcgcgcaggccgtggccgcctgcgcccacctcagcagcgtgccgggccgcatg
gaccgcgtgcagccgaccgagggcgcgccgctggccgtggtcgactacgcccacacgccc
gacgcactcgacaaggccctcgccggcctgcgcccgttggccaagcaacgcggcggcgcg
ctctggtgcgtgttcggctgcggcggcaaccgcgacccgatcaagcgcccgctgatggcg
gctgtcgccgaacggcaggccgaccatgtggtgctcaccagcgacaacccgcgcaacgag
aaccccgacgcgatcatcagccaggcgctgcgcggcttcacgcgcgtcgaggcggcccgc
gtgcaggtcgaccgcgcgcgcgccatcgccgaaaccatcgcccaggcggcgccacaagat
gtggtgctgatcgccggcaagggccacgaagagtggcaggagatcgcgggccagcgcctg
ccgttctccgacaagacccacgcgctcgaagcgctcgcgaagcggggtgccgcatga
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