Variovorax boronicumulans: CKY39_15935
Help
Entry
CKY39_15935 CDS
T05068
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
vbo
Variovorax boronicumulans
Pathway
vbo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CKY39_15935 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vbo03400
]
CKY39_15935 (nth)
Enzymes [BR:
vbo01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CKY39_15935 (nth)
DNA repair and recombination proteins [BR:
vbo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CKY39_15935 (nth)
Prokaryotic type
CKY39_15935 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
HHH_8
Motif
Other DBs
NCBI-ProteinID:
ATA54532
UniProt:
A0A250DJV2
LinkDB
All DBs
Position
complement(3466524..3467171)
Genome browser
AA seq
215 aa
AA seq
DB search
MKKSDIPLFFATLQAANPEPRTELEYTTPFELLAAVLLSAQATDVGVNKATRRLYPVANT
PQAILDLGVEGLESYIKTIGLYRSKAKHLIEACRMLVELHGGEVPRTRAELEALPGVGRK
TANVVLNVAFGEETIAVDTHIFRIGNRTGLAPGKTPLDVELKLEKRIPPEFRLHAHHWLI
LHGRYVCVARKPRCWECAVSTFCSFKPKTPAPKTA
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaatccgacatccccctcttcttcgccaccctgcaggccgccaaccccgagccg
cgcacggagctcgaatacaccacgcccttcgagctgctggccgccgtgctgctgtcggcg
caggccaccgacgtgggcgtgaacaaggcgacgcgccggctgtatccggtggcgaacacg
ccgcaagcgatcctcgacctcggggtggaagggctggagtcgtacatcaagacgatcggg
ctgtaccgcagcaaggccaagcacctgatcgaggcctgccgcatgctggtcgagctgcat
ggcggcgaggtgccgcgcacgcgcgccgaactcgaggcgctgcccggcgtggggcgcaag
accgccaacgtggtgctcaacgtggccttcggcgaagagaccatcgcggtcgacacgcac
atcttccgcatcggcaaccgcaccgggcttgcgcccggcaagacgccgctggacgtggaa
ctcaagctcgaaaagcgcatcccacccgaattccgcctgcacgcgcaccattggctgatc
ctgcacgggcgctatgtctgcgtggcgcgcaagccgcgctgctgggaatgcgcggtctcc
accttctgctcgttcaagcccaagacgccggcccccaagaccgcctga
DBGET
integrated database retrieval system
