Variovorax boronicumulans: CKY39_17645
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Entry
CKY39_17645 CDS
T05068
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vbo
Variovorax boronicumulans
Pathway
vbo03030
DNA replication
vbo03410
Base excision repair
vbo03420
Nucleotide excision repair
vbo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKY39_17645 (ligA)
03410 Base excision repair
CKY39_17645 (ligA)
03420 Nucleotide excision repair
CKY39_17645 (ligA)
03430 Mismatch repair
CKY39_17645 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vbo03032
]
CKY39_17645 (ligA)
03400 DNA repair and recombination proteins [BR:
vbo03400
]
CKY39_17645 (ligA)
Enzymes [BR:
vbo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CKY39_17645 (ligA)
DNA replication proteins [BR:
vbo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CKY39_17645 (ligA)
DNA repair and recombination proteins [BR:
vbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CKY39_17645 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKY39_17645 (ligA)
MMR (mismatch excision repair)
DNA ligase
CKY39_17645 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CKY39_17645 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ATA54828
UniProt:
A0A250DKC8
LinkDB
All DBs
Position
complement(3817150..3819246)
Genome browser
AA seq
698 aa
AA seq
DB search
MTTRDEAAREAAALSEQLHRHAHLYYVLDAPELPDAEYDKMFQRLQVLETEFPELRTPDS
PTQRVGGTVLDSLAKVRHRVPMLSIRTETDITPAGASAFDARVRRELGLAEDAPQISYVC
ELKFDGLAMSLRYEHGVLVQAATRGDGEVGEDVTQNIRTVREIPLKLKGAAPPVVEVRGE
VYMKRADFDALNERQRQKIAAGQKNEKVFVNPRNAAAGAVRQHDPAIAAERPLSFFAYGL
GEVSPASEGGPEIATQFDWLQQFHAWGFPVATQTARATGAIELIAFHETIGRQRDALPYD
IDGVVYKVDSLELQRQLGFVSREPRWAVAHKYPAQEQLTEVVGIEIQVGRTGKLTPVAKL
APVFVGGVTVTNATLHNEDEARRKDVRVGDTVIVRRAGDVIPEVVGVAPDSLAKPDDQRG
AVFTMPHKCPVCDSEAVREEGEVDYRCTGGLFCAAQRKEAILHFAARRAVDVDGLGDKLV
EQLVDANLIRTLPDLYKLGFVTLAGLDRMAEKSAQNLVDALEASKKTTLPRFLFGLGIRH
VGESTAKDLAKHFGKLDAIMDATEELLLEVNDVGPVVAQSLRTFFDQPHNREVVEQLRAC
GLTWDEFEPEARAPKPLAGLTFVITGTLPTLGRDEAKDKLEAAGAKVAGSVSKKTHYLVA
GEEAGSKLDKARDLGVTVIDEARMLEILASGVPPAPDA
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgcgcgacgaagcggcacgcgaagccgccgcactgagcgagcagctgcatcgc
cacgcccatctgtactacgtgctcgacgcccccgagctgcccgacgccgagtacgacaag
atgttccagcgcctgcaggtcctggagaccgagtttcccgagctgcgcacgcccgattcg
ccgacgcagcgcgtgggcggcacggtgctcgacagcctggccaaggtgcgccaccgggtg
ccgatgctgtcgatccgcaccgagaccgacatcacgcccgccggcgccagcgccttcgac
gcacgcgtgcgccgcgagctgggcctggccgaagacgcgccgcagatcagctacgtctgc
gaactcaagttcgacgggctggccatgagcctgcgctacgagcacggcgtgctggtgcag
gctgccacgcgcggcgacggcgaggtgggcgaggacgtcacgcagaacatccgcaccgtg
cgcgagattccgctcaagctcaagggtgcggcgccacccgtggtcgaggtgcgcggcgag
gtctatatgaagcgcgccgatttcgatgccctcaacgagcgccagcgccagaagatcgcc
gccgggcagaagaacgagaaggtgttcgtcaacccgcgcaacgcagcggccggcgcggtg
cgccagcacgacccggcgattgcggcagagcgcccgctgagcttctttgcgtatggcctg
ggcgaggtctcgcccgcgagcgagggcggtcccgagatcgcgacccagttcgactggctg
cagcagttccacgcctggggctttccggtggccacgcagaccgcgcgggcgaccggtgct
attgaactgatagcgttccacgaaaccatcggccgccagcgcgatgcgctgccgtacgac
atcgacggcgtggtctacaaggtcgacagcctggagctgcagcgccagctgggctttgtt
tcgcgcgaaccgcgctgggccgtggcccacaagtacccggcgcaggagcagctgaccgag
gtggtcggcatcgagatccaggtgggccgaaccggcaagctcacgccggtggccaagctg
gcaccggtgttcgtgggtggcgtgaccgtgaccaacgccacgctgcacaacgaggacgaa
gcccgccgcaaggacgtgcgcgtgggagataccgtgatcgtgcggcgcgccggcgacgtg
attccggaagtggtgggcgtggcgcccgacagcctggccaagcccgacgaccagcgcggc
gcggtcttcaccatgccgcacaagtgccccgtctgcgattccgaggcggtgcgggaggag
ggcgaggtcgactaccgctgcaccggcggcctgttctgcgcggcacagcgcaaggaggcc
atcctgcatttcgcggcgcggcgcgcggtcgatgtcgacgggctgggcgacaagctggtc
gagcagctggtcgatgccaacctgatccgcaccttgcccgatctgtacaagctcggcttc
gtcacgctggcgggcctggaccgcatggccgagaagtcggcccagaacctcgtcgacgcg
ctcgaggcctcgaagaagaccacgctgccgcgctttttgttcggcctgggcatccgccac
gtcggcgagagcacggcgaaagacctcgccaagcatttcggcaagctcgacgccatcatg
gacgcgaccgaggagctgctgctcgaggtcaacgacgtcggcccggtggtggcgcagagc
ctgcgcaccttcttcgaccagccgcacaaccgcgaggtggtcgagcagctgcgcgcctgc
ggcctgacctgggacgagttcgagcccgaagcccgcgcgcccaagcctttggcgggactg
accttcgtgatcaccggcacccttcctacgctgggccgcgacgaagcgaaggataaattg
gaggcagccggcgccaaggtggccggctccgtcagcaagaagacccactacctcgtggcc
ggggaagaggcgggcagcaagctggacaaggcgcgcgacctcggcgtcacggtgattgac
gaggcgcgtatgctggagatcctcgccagcggtgttccgccggcacccgacgcctga
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