Vibrio breoganii: A6E01_09435
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Entry
A6E01_09435 CDS
T04649
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vbr
Vibrio breoganii
Pathway
vbr03030
DNA replication
vbr03410
Base excision repair
vbr03420
Nucleotide excision repair
vbr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A6E01_09435 (ligA)
03410 Base excision repair
A6E01_09435 (ligA)
03420 Nucleotide excision repair
A6E01_09435 (ligA)
03430 Mismatch repair
A6E01_09435 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vbr03032
]
A6E01_09435 (ligA)
03400 DNA repair and recombination proteins [BR:
vbr03400
]
A6E01_09435 (ligA)
Enzymes [BR:
vbr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A6E01_09435 (ligA)
DNA replication proteins [BR:
vbr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A6E01_09435 (ligA)
DNA repair and recombination proteins [BR:
vbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A6E01_09435 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A6E01_09435 (ligA)
MMR (mismatch excision repair)
DNA ligase
A6E01_09435 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A6E01_09435 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ANO33425
UniProt:
A0AAN1CSD3
LinkDB
All DBs
Position
1:complement(2050378..2052405)
Genome browser
AA seq
675 aa
AA seq
DB search
MPDSIQQQHAKLSEALHYHAVRYYVEDSPEIPDAEYDRLMRQLIELEEANPELVTVDSPS
QRVGGAPLSGFTQVTHQVPMLSLDNAFDDSELKAFHKRMQDRLNSSELGAFSCEPKLDGL
AVSLMYENGVLVQAATRGDGTTGENITQNVRTISAIPLKLQGEGYPTRLEVRGEVFMPKA
GFDRFNEQAIAKGEKPFANPRNAAAGSLRQLDSRITAKRPLGFYAYSVGVIEGGELENSH
YQRFLQLKEWGLPMCPVVRKVENLNDVIAYYQYILETRDDLDYEIDGVVIKLDEIAKQEQ
LGFVARAPRWAIAYKFPAQEELTTLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIQRLGVMVGDTVIIRRAGDVIPQITGVVLDRRPDDAKAIVYPVVCPVCGSDAERTE
GEAVTRCTGGLVCSAQRKQALKHFVSRKAMDVDGLGDKVVEQLVEKEMVQTPADLFKLSA
GRITVLDRMGPKSAQNVVDALEKSKQTTLPRFLYSLGIREVGEATAANLAQHFKTLERIE
QASVEALLEVPDVGAIVAEHIKAFFAQERNQAVIAELIESGINWAEIKEVANAEELPLAG
KTVVLTGSLSQLTRSDAKAALQNLGAKVTGSVSKKTDILFAGEAAGSKLAKAQDLGVEIQ
DEQGLIDLMQQHGIS
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgccagattctattcaacaacaacacgctaagctatctgaggcactgcattatcatgcg
gtgcgttattatgttgaggatagccctgagatcccagatgcagaatacgatcgcttgatg
cgtcaactcattgaattagaagaagctaaccctgaattagtcacggtggactcaccctcg
caaagggtaggcggagcgccattgtcaggctttacccaagtcacccatcaagtgccaatg
ttatctctagataatgcctttgatgattcggagctcaaggcgtttcataaacgcatgcaa
gatagactgaatagcagtgagcttggtgcgttcagttgcgagcctaagcttgacggccta
gcggtgagcttgatgtatgaaaatggcgtgttagttcaagcggcaacccgtggtgatgga
acgacgggtgaaaacattactcagaacgttcgcaccattagcgctatccctttaaaactg
cagggcgagggctatccaacgcgacttgaagtgcgcggtgaagtctttatgcctaaggcg
ggttttgaccgttttaacgagcaggcgatagcgaagggcgaaaagccgtttgctaaccca
agaaacgcagcagcgggtagtttgcgtcagttagattcgcgcattacggcaaaacgtcct
ttgggtttttatgcctatagcgtgggcgttattgagggaggcgagctggaaaacagccac
tatcaacgctttttgcagctcaaagagtggggattacctatgtgccctgtggtgcgtaag
gttgaaaacctcaatgacgtgattgcttactaccaatacattcttgagacgcgagatgac
cttgattacgagatagatggcgtagtgatcaagcttgatgaaatagcaaagcaagagcag
cttggctttgtcgctcgcgctccgcgttgggctattgcctacaagtttcctgcacaagaa
gaactgacaacactgaatgatgtggagtttcaggtagggcgcactggcgccattacgcct
gtagctaagcttgagccggtatttgttggcggcgtgacggtcagcaatgccaccttgcac
aacgccgatgaaatccagcgtttgggcgtgatggtgggagatacggttattatccgccgt
gcgggtgatgtgatccctcaaatcactggcgtggtgttagacagacgcccagatgatgcc
aaagcgattgtctacccagtggtatgccctgtgtgtggctccgatgctgaacgtaccgaa
ggtgaagcggtgacccgttgtactggtggattggtatgttctgcgcaacgtaagcaagca
ctgaagcactttgtatcgcgtaaagcgatggatgtggatggcttaggcgacaaggtcgtt
gagcaattagtcgaaaaagaaatggtgcaaacaccagccgatcttttcaagctaagtgca
ggtcgaattactgttcttgaccgtatgggaccaaaatctgcgcaaaatgttgtcgacgcc
ctagaaaaatcaaaacaaacgaccctacctcgattcttatattctttaggcattcgagaa
gtaggagaggctaccgcagccaacttagcgcagcactttaagacccttgagcgtattgag
caagcaagcgttgaagctttgctggaagtgcccgatgttggagccattgtggctgagcac
attaaggcattctttgctcaagagcgaaatcaagcggtgattgccgagcttatcgagagc
ggcatcaactgggctgagattaaggaagtggcaaatgccgaagaattacctttagcaggt
aaaacggtcgtgctaacgggctcactatcccagcttactcgctcagatgctaaggctgca
ctgcaaaacctaggcgctaaggtaacgggcagtgtgtcgaaaaagaccgacatcttgttt
gctggtgaagcggcaggctccaagctcgcaaaagcgcaagaccttggggttgaaatacaa
gatgagcaagggctgattgatttaatgcaacagcacggcattagctaa
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