Verrucomicrobia bacterium S94: EGM51_17165
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Entry
EGM51_17165 CDS
T05990
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vbs
Verrucomicrobia bacterium S94
Pathway
vbs03030
DNA replication
vbs03410
Base excision repair
vbs03420
Nucleotide excision repair
vbs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EGM51_17165 (ligA)
03410 Base excision repair
EGM51_17165 (ligA)
03420 Nucleotide excision repair
EGM51_17165 (ligA)
03430 Mismatch repair
EGM51_17165 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vbs03032
]
EGM51_17165 (ligA)
03400 DNA repair and recombination proteins [BR:
vbs03400
]
EGM51_17165 (ligA)
Enzymes [BR:
vbs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EGM51_17165 (ligA)
DNA replication proteins [BR:
vbs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EGM51_17165 (ligA)
DNA repair and recombination proteins [BR:
vbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EGM51_17165 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EGM51_17165 (ligA)
MMR (mismatch excision repair)
DNA ligase
EGM51_17165 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EGM51_17165 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Zn_ribbon_NUD
E1-E2_ATPase
HMBD
Motif
Other DBs
NCBI-ProteinID:
QBG49042
UniProt:
A0A4P6PHV7
LinkDB
All DBs
Position
complement(3890229..3892280)
Genome browser
AA seq
683 aa
AA seq
DB search
MTDKAEAKQKIDKLRAEIERHNRLYYIDAAPEITDREYDALLQSLEKLERKFPEFSSPTS
PTQRVGGAPLARFDSVRHAVPMMSLSNTYSKEELAEFDIRIRKLIPEETFDYILEPKIDG
VAISLRYENGELVRALTRGDGTTGDDVTANVRTIKSIPLRLTDMMPPAVLEVRGEIYMDT
RGFGALNEQRQEAGLEPFANPRNACAGSLKLLDPREVASRPLDAVFYATGELVGIDFDTH
EQMLLKLRNYGLRITPKYWLRNTIAEIIELLDELENMRHEFPFGMDGGVIKVNQRRLYED
LGYTAKSPRWAVAYKYEPEQAETRLNAISIQVGRTGVLTPVAELEPVPLAGTTVKRATLH
NEDEIRRKDIRIGDRVIIEKAGEIIPAVVKVLDEKRTGTEKEFSMPGRCPVCGSEVEKRD
GEVAVRCINLQCPAQVKNWLTHFASRGAMDINGLGESLVEQLVDGGLVKNPAELYTLRKV
EVLGLERMGEKSADNLIKGIEESRKRPFEKVLFGLGIRHVGKGAASILAREFKNIDALMA
TDIQTLENIRDIGPIVGKSIVEYFQSPDTRRIIEQLRTAGVNFEQKNEGGSNELEGLTFV
LTGSLKTMTRDEAGDKIKARGGKVSSSVSKKTSYLVAGEAAGSKLAKAEALGVTILNEEQ
LINLLSSDEDAEDKNTGQMGFAF
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgacagacaaagccgaagccaagcagaagatcgataaattgcgcgctgaaattgagcgc
cataaccgcctctattatattgatgccgcaccggagatcaccgaccgcgaatacgatgcc
ctcctccagtcactggaaaaactggaacggaaatttccggaattcagcagccccacctcc
ccgacccagcgggtcggcggtgctccgctggcccgcttcgacagtgtgcggcatgcggtg
ccgatgatgagcctttccaatacctattccaaagaggaactggccgaatttgatattcgg
atccgaaaactgattcccgaggagacctttgactatattcttgaaccgaaaatcgacggc
gtggccatttcgctacggtatgaaaacggcgaattagtccgtgcgctgacgcgcggcgac
ggaacgacgggcgatgatgtaacggcgaatgttcggaccattaaatcaattccgcttcgc
ctgaccgatatgatgccgccggccgtactggaggtacgcggcgaaatttatatggatacc
cggggtttcggcgcactgaatgaacagcggcaggaagccggactggaaccttttgccaat
ccccgcaatgcctgtgccggatcactgaaactgctcgatccgcgcgaagtggcttcccgc
ccgctggatgctgttttttatgccaccggcgaactcgtcggtattgatttcgatacccac
gagcagatgcttctgaaattgcggaactacggactgcggattacgccgaagtattggctt
cggaacacgattgctgaaattatcgaactgcttgatgaactggaaaacatgcgccacgaa
tttccgttcgggatggacggcggtgtaattaaagtaaaccagcgccgcctctacgaggac
ctcggctatacggccaaaagtccgcgctgggccgtggcctataaatatgaaccggaacag
gccgaaacccggcttaacgccatttccatccaggtgggccgcaccggcgtgctgactccg
gtggcggaacttgaaccggtaccgctggccggaaccacggtcaaacgcgccacattacac
aacgaagacgaaatccgacgtaaagatatccgcatcggcgaccgcgtaattatcgaaaag
gccggggagattattccggctgtagtcaaagtgctggacgaaaaacgtacaggaaccgag
aaggagttttcgatgcccggccgatgcccggtctgcggcagcgaggtcgaaaagcgggac
ggcgaagtggcggtacgctgcatcaaccttcaatgtccggcacaggtgaaaaactggctt
acccattttgcatcgcgcggggccatggatattaacggactgggcgaatctctggtggaa
caattggtggatggcgggttagtgaaaaatccggccgaactctacaccctccggaaagtg
gaggtgctcggacttgaacgcatgggcgaaaaatcagccgacaatctcattaaaggcatt
gaagagagcagaaaaaggccttttgaaaaagtgctgttcggcctcggtattcgtcatgtc
ggcaaaggagcggcctctattcttgcccgggaattcaaaaacatcgatgctctgatggcg
actgacattcagacactggaaaatattcgcgatatcggccccatcgtcggaaaatcaatc
gtggaatatttccaatcccccgatacccgccgaattatcgaacaactccggacggccggc
gtaaattttgaacagaaaaacgaaggcggcagtaacgaacttgaagggcttacatttgta
ctgaccggatctctgaaaaccatgacccgggatgaagccggcgataagatcaaggctcgg
ggcggaaaagtcagcagcagtgtttcaaaaaaaaccagctatctggtggcaggcgaagcc
gcaggctcaaaactggccaaagccgaagcccttggggtcaccattctgaatgaggaacag
ctgatcaatctactgagttccgatgaagatgccgaagataaaaacaccggccagatgggc
tttgcattttaa
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