Venturia canescens: 122406711
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Entry
122406711 CDS
T09386
Name
(RefSeq) RNA-binding motif protein, X-linked 2 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
vcan
Venturia canescens
Pathway
vcan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122406711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcan03019
]
122406711
Messenger RNA biogenesis [BR:
vcan03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
122406711
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
RRM_7
Motif
Other DBs
NCBI-GeneID:
122406711
NCBI-ProteinID:
XP_043268292
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All DBs
Position
1:complement(4724385..4742917)
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AA seq
482 aa
AA seq
DB search
MSSYVQVAEDEGEEPIELPTEDDISSTLLLTTLAAQYPGTCGLKYRNPESKAMRGVRLVN
GRLYPPENGWGETVYFCVFPKENKRKSDDNLENSTAKTKRMETKLRCTDLIVLGLPWKTS
EQNLRDYFETFGEVLMAQVKKDAKSGQSKGFGFIRFGSYESQLRCLAQRHMIDGRWCDVK
VPNSKNIDGIMMARQFDTGKHSECYRPIPVHTPSSRRLPAGKAGYMNTNSETSTSPRYDA
DYDYKTTHYPSYPSNYPYDETKYKYEAGSYNHYEKQGVYASAGYDDPGYDSRTYVTSSSS
HPTGVAASSNYPNEQEYATRYPSYEGGGGGRSSYPSAETGEYAEKSRYGSAGYPSNYERT
YYESESRYLANSEARHPNEAGGRYADSRHVDARNQIDNRETDLRYGIEARENDRRYFNDL
RDDDGSRYPNDLRDPENRYVDARGNDSRFNESARYQATEKYYDRYYKHRPSRDHHVSETS
RY
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgtacgttcaggttgccgaagatgagggcgaggagcccatcgagttgccaaca
gaggacgacattagtagtacattattgttgactactttagcggcacagtatcctggtact
tgcggtcttaagtatcgcaatccagaatcgaaagctatgcgcggcgtccgtctcgtaaac
ggtcgtctttatccgcccgaaaacggatggggcgaaaccgtctatttctgcgtttttcca
aaagaaaacaaacgcaaatccgatgacaatttggaaaattccacagcaaagactaagaga
atggaaacaaagttacgctgcaccgatctcatcgtactcggcctcccatggaaaacatca
gagcaaaatttgcgcgattatttcgagactttcggcgaagttttgatggcacaagtgaag
aaagatgcaaagtccggtcagagcaaaggttttggtttcataagatttggtagttacgag
tcgcagttgagatgcttagctcagaggcacatgatagacggacgatggtgcgacgtcaaa
gttcccaacagcaagaatattgacggcataatgatggcacgtcagtttgatacgggtaag
cacagcgagtgttatcgtcctataccggttcacacgccaagtagcagacgtttgccagcg
ggaaaagcgggctacatgaatacgaattcggagacatcgacgtcgccgcgttacgatgcc
gattacgactacaagacgacgcactatccgtcgtatccttcaaactatccgtacgacgag
acgaaatacaaatacgaggcgggctcgtacaaccattacgagaagcagggagtttacgct
tcggctggctacgacgatccgggatatgattcgaggacttacgtcacttcttcctcctcc
catccgacgggggtagctgcttcgtcgaactacccgaacgagcaggaatacgcgacgaga
tacccgagctacgagggcggcgggggcggccggtcctcttatccgagcgcggaaacgggc
gaatacgcagaaaaatcgagatacggaagcgccggttacccctccaattacgagagaact
tactacgaatccgagtccagatacttggcgaacagcgaagcgagacacccgaacgaagcg
ggcggcaggtacgccgactccagacacgtcgacgctcgaaatcaaatcgacaaccgcgaa
acggacctacgttacgggatcgaagcccgggaaaacgacagaagatatttcaacgatctg
cgcgacgacgacggatctcgctatcccaatgacctcagagatcccgaaaatcgctacgtc
gacgcacgcggcaacgattcacggttcaacgaatccgcccgatatcaagccacggagaaa
tattacgatcgctattacaaacatcgaccgtcgagggatcatcacgtctcggaaacttcc
cgatactga
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