Venturia canescens: 122410964
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Entry
122410964 CDS
T09386
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
vcan
Venturia canescens
Pathway
vcan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122410964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcan03041
]
122410964
Spliceosome [BR:
vcan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122410964
Complex C
U5 SnRNP specific factors
122410964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
Roc
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
122410964
NCBI-ProteinID:
XP_043275408
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All DBs
Position
5:9770078..9784765
Genome browser
AA seq
987 aa
AA seq
DB search
MCQVQLLIMDADLYDEFGNYIGPDLASESEDENEYGNVGDEAEDRERSDEEMEEDRDELR
DQAEQSSMAVVLHEDKRYYPSALEVYGPDVETLVQEEDAQPLDKPLIAPVRKPKFQIKQQ
QLPGTTYNIEFLADMMDAPHLIRNVVLLGHLHHGKTTLVDCLVRQTHPNIHSVTDEKPLR
YTDTLFTEQQRGVSTKATPVTLLLQDVKSKSYLLNIFDTPGHVNFSDEATAAIRVSDGAI
IVVDAAEGVMLNTERLLKHALQEKLALTVCINKIDRLVLELKLPPLDAYYKLRHIVDEIN
GLIAMYSDSENPTFLSPTTGNVCFASSEYNVCFTLKSFAALYARNHPSLNAAEFAKRLWG
DIYFNSKTRKFIKKPPHNTAQRSFIEFILEPLYKIFAQVVGDVDSTLPDVLDELGIRLSS
EEMKMNIRPLLRLVCTRFLGDMCGLVDMCVCHVPSPHAHAATKVQHVYTGNMDSPIVQDM
INCDPEGRLMIHSTKMYPTEDCTLFVVLGRIMSGTLEAGQRVRVLGEAYSRADEEDSRIL
TVGRLWISEARYSIELNRIPAGNWVLIEGIDRPIVKTSTITDLSNSDDLHIFRPLKFNTQ
SVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLGTRVEESGEHVVLGTGELYLDCAMHDLR
RMYSEIDIKVADPVVAFAETVVETSSLKCFAETPNKRNKLTMIAEPLERGLAEDIEAEHV
RITWNKKRLGEFFQTKYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVDKSLLSSARDA
ITQGFQWGTREGPLCEEPIRNVKFKILDAIIAQEPLHRGGGQIIPTARRVAYSAFLMATP
RLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFET
DLRTHTQGQAFCLSVFHHWQIVPGDPLDKSITIRPLEPQPATHLAREFMLKTRRRKGLSE
DVSINKFFDDPMLLELARQDVLLNYPL
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgtgccaagtacaattattaatcatggatgccgatctttacgacgagtttggtaattat
atcggaccggatttagcatctgagagcgaggacgaaaatgagtatggtaatgtcggtgat
gaagctgaagatcgcgagcggtcggatgaggaaatggaagaagatagggatgaacttcga
gatcaggccgaacagtcttctatggctgttgtactgcacgaggataagcgttattatcca
agcgctcttgaagtttatggacctgacgtagagacgctcgttcaagaggaagatgctcag
ccattggataagcctctcatagcaccagttcggaaaccaaaatttcaaataaaacagcaa
caattgccaggcacaacgtacaatatagaattcttggctgatatgatggatgctcctcat
ttgattcgtaatgtagttcttttgggtcatctacatcatggaaaaacgacactcgttgac
tgtcttgtacgacagactcatccgaatatacacagcgtgacggatgagaaacctcttcga
tatacggatactctgtttacagagcagcagagaggagtttcgacaaaagcgactccagta
acattacttttgcaagatgtcaagtcgaaatcttatcttttgaatatttttgacactccg
ggacatgtgaatttttcggatgaagccaccgcggccattcgagtttcggatggtgcaatt
attgtggttgacgctgcagaaggtgtaatgttgaacacagaacgtcttcttaaacatgct
ttgcaagaaaaacttgctttgaccgtttgtataaacaaaattgaccgcctggtgctggaa
ctgaaattaccaccgctcgatgcatattacaaattacgacatatcgttgacgaaataaat
ggccttatcgccatgtattctgattcggaaaatccaactttcctttcacctaccactgga
aacgtttgcttcgcgagttccgagtacaacgtttgcttcaccttaaaatctttcgctgcc
ctgtacgcacgaaatcacccatctttgaatgctgcagaattcgccaaacgcttatggggt
gatatttatttcaactccaagactcgaaaatttattaaaaaaccaccccacaacacggct
caaaggagtttcattgaatttattcttgaacccctctacaagatttttgcacaagtcgtt
ggagatgtcgactcaacattaccggacgtgctcgacgaactgggtataagactatcatcc
gaagaaatgaagatgaacataagaccgttgttacggttggtgtgcacacgttttttagga
gacatgtgcggtttagtggacatgtgcgtatgtcatgttccaagtcctcatgcacacgcg
gcaacgaaggttcaacacgtttatacgggaaatatggattccccgatagtacaggatatg
ataaattgtgatccggaaggacgattaatgatacacagtacaaaaatgtatccaacggag
gattgcacgttgttcgttgtgcttgggcgcatcatgtcgggtactttggaagctggacaa
cgtgtgcgagttttgggggaggcgtattcacgagctgacgaggaagactcaagaattcta
acggttggaagattgtggatcagtgaggctcgttattcaatagagttgaatcgtatccca
gccgggaattgggttctcatcgagggaatcgatcggccgattgtgaaaacgagtaccatt
accgatctcagtaattctgatgatcttcatattttccggccactcaaattcaacactcag
agcgtcataaaaatcgcagttgaacctgtaaacccatcagaattgccaaaaatgctcgat
ggtttacgaaaagttaacaaaagctatcctctccttggcacgcgagtcgaagagagtggc
gagcacgttgttcttggtactggtgaattgtacctcgattgcgcgatgcatgatttgcga
cggatgtattctgaaatcgatatcaaagtcgctgatcctgtcgtcgcttttgccgagact
gtcgttgaaacgagctcactcaaatgttttgccgaaactcctaataaacgtaacaagctt
acaatgattgcagaacctcttgaacgaggtttggccgaagatatcgaagctgaacacgtc
cggataacatggaataaaaagcgattgggtgaattttttcaaacaaagtacgactgggat
cttttagctgctcgaagtatctgggcttttggacctgattcgacaggacctaatattttg
gtcgatgatactcttccatccgaggtcgataaatctcttttgagtagcgccagagatgcc
attactcaaggatttcagtggggcactcgtgaaggtccactctgcgaagaacctattcgt
aacgtcaaattcaaaattttggatgccattattgcccaggaaccacttcatcgtggcgga
ggtcaaataattcccactgcaagacgtgttgcgtattcagcgtttctgatggcaacaccc
aggttaatggaaccatacttgttcgttgaagttcaagctccagctgactgcgtgtccgct
gtctatacagtcctcgctaaacgacgaggtcacgtgacccaggatgctcctgtgcctgga
agtcctctttatacgatcaaagcgttcattccagctattgacagtttcggttttgagacc
gatcttcggacgcacacacaaggtcaagcattttgtctctcggtatttcatcactggcaa
attgtacccggtgatccattggacaaaagtatcactatacgacctctcgagcctcaacca
gcgacacacctcgcacgagaattcatgctcaaaacacgaagacgcaaaggactctccgaa
gatgtgtcgataaataaattcttcgacgatcccatgttgctcgaactggctagacaagat
gtactcttaaattatcctctttga
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