Varibaculum cambriense: CYK25_006050
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Entry
CYK25_006050 CDS
T09090
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
vcb
Varibaculum cambriense
Pathway
vcb00300
Lysine biosynthesis
vcb00550
Peptidoglycan biosynthesis
vcb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vcb00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
CYK25_006050
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
CYK25_006050
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vcb01011
]
CYK25_006050
Enzymes [BR:
vcb01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
CYK25_006050
Peptidoglycan biosynthesis and degradation proteins [BR:
vcb01011
]
Precursor biosynthesis
Amino acid ligase
CYK25_006050
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
Motif
Other DBs
NCBI-ProteinID:
WIK87796
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All DBs
Position
complement(1301252..1302832)
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AA seq
526 aa
AA seq
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MTVTFRDFRPQNIAPVSLARLVAGFTPEIDASWEEIPVRGVSMASDEILAGEAFIAVGGA
NVHAAKFAGEVESLGAVAVITDEKGAEIARSQGVKIPVVTVPDPREAASPLAIRAFDNPA
GKMKTVAVTGTNGKTTTCFAAKFAFEAAGLATMILSTAETQVGDLRIQSSRTTFEGPMLQ
RILAYGVEQGMQAAVVEVSAHALALARIAGMKFDATAFTNLQHDHLDYFHTMENYLAAKA
RLCSKEFTDYSVICVDDKWGQQLAANCDTQNLTVSAYDPAAQADWVVTRKVNNIAHAACD
FTLTGKTEPNVGREEKITVALPGEVNVQDAAIAYLLVTGIGIPAEAVKAGLATLAVPGRL
EIVSRRNEGTPLVINDYAHTPEALASILRTMQEFTPGKLHLVFGTDGDRDATKRVPLAKV
AAQEADILWVTDENPRTENAQSIRAQLLSGIKEERPEMENVCEVTTCRRDAIRKAILAAH
SDDTVIITGKGAEPYQEIEGVFHAFNDTPVARDCLAAYKNRAHIQG
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtaacttttcgagattttcgtccccaaaatattgctccggtttcgctggcgcgt
ttagttgccggctttacccccgaaatcgatgcctcctgggaagagattccagtgcgagga
gtctctatggcgtctgatgagattttagccggggaggcctttatagcagtgggcggggcg
aatgtgcatgccgccaagtttgcaggtgaggtggaatctctgggggcagtagcggttatt
actgatgaaaagggtgcggagattgctcgttcccaaggggtgaaaatcccggtggtgacg
gtgccggatccgcgggaagcggcttcacccctcgcgattagagccttcgataatccggca
gggaaaatgaaaaccgtggcggtaaccggaactaatggcaagaccactacttgttttgct
gccaaatttgcttttgaagcggcagggcttgccaccatgattctttctacggcggaaact
caggtgggggatttgcggattcaatcttcgcgtaccacgtttgaaggtccgatgttgcag
cgaatcctggcttacggggtggagcaggggatgcaggccgcagtagtggaagtatccgcg
catgccctggctttggcgcgcatagctggaatgaagttcgatgccaccgcttttacgaac
ctgcagcatgatcatctggattatttccacacgatggaaaactacctggcagctaaggcg
cggttgtgttctaaagagtttacggattatagcgtgatctgcgtcgatgataagtggggg
cagcaattagcggctaattgtgacacccaaaatctgacagtatctgcctacgatccggct
gcgcaagccgattgggtagtaacccgaaaagttaacaacattgcgcatgcggcgtgcgat
tttactttaactgggaagacggaaccgaatgtggggcgcgaggaaaaaattaccgttgcc
ctgcccggggaggtaaatgtgcaagatgccgcgattgcctatctgctggttaccggaata
gggattccagctgaggccgtaaaagcgggcttagcgaccctagccgttcccgggcgcctg
gaaatcgtcagccggcgtaatgaaggtaccccgctggtaatcaatgattatgcccatacc
ccggaggcgttagcttcgattctgcgcactatgcaagagttcacgcccgggaaactacac
ctggtttttggtaccgacggggatcgcgatgcgaccaaacgggtgccgctagctaaagtg
gctgctcaagaggcagatattctctgggtgactgacgaaaatccgcgcaccgagaatgcc
caaagtattcgcgcccagctgctatccgggattaaagaggaacgccccgagatggagaac
gtttgtgaagtaactacctgccgccgggatgccatccggaaagcaattttggctgctcat
tcggacgatacggtaataatcactggcaaaggcgcggagccctatcaagaaattgaggga
gttttccacgcttttaatgacacgccggtggctcgcgattgcctggcagcctataagaat
cgcgctcatattcaggggtaa
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