KEGG   Varibaculum cambriense: CYK25_006400
Entry
CYK25_006400      CDS       T09090                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
vcb  Varibaculum cambriense
Pathway
vcb03030  DNA replication
vcb03410  Base excision repair
vcb03420  Nucleotide excision repair
vcb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vcb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CYK25_006400
   03410 Base excision repair
    CYK25_006400
   03420 Nucleotide excision repair
    CYK25_006400
   03430 Mismatch repair
    CYK25_006400
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vcb03032]
    CYK25_006400
   03400 DNA repair and recombination proteins [BR:vcb03400]
    CYK25_006400
Enzymes [BR:vcb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CYK25_006400
DNA replication proteins [BR:vcb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CYK25_006400
DNA repair and recombination proteins [BR:vcb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CYK25_006400
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CYK25_006400
   MMR (mismatch excision repair)
    DNA ligase
     CYK25_006400
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CYK25_006400
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 DNA_ligase_ZBD BRCT Nlig-Ia HHH_5 PTCB-BRCT HHH
Other DBs
NCBI-ProteinID: WIK87856
LinkDB
Position
complement(1376159..1378768)
AA seq 869 aa
MASEYEQALTQAQKQWEVLADQINQARVLYYDRDRPTLSDAQYDQLFRQLEELEGRFPQL
INPDSPTQTVGGSAQKTFSSVTHLERMASLDDVFDTEEVSSWYQRMAQATGEENPQVSAE
VKIDGLAVNLTYRNGKLALGATRGDGSVGEDVTANIRTIANVPQKLSGKVVPELCEIRGE
IYFPLSAFNQLNEQRSAQWEEYSAAKKAGNLAAWRAERQKTGLPSKVEPPFVNPRNAAAG
SLRQKDARVTAARPLALIAHGIGKVQWKAADLAAGFTPPTSQLQWYHQLSQWGLPVSEYT
RPLRGLDKIQEFITHIGKIRPEISHEIDGVVLKIDDLKTQGELGFTARAPRWAVAYKFPP
QEVHTKLLDIRVGVGRTGRITPYGVMEKVLVDGSNVERATLHNPFEVRRKGVKIGDTVVL
RKAGDVIPEIVCPVVDLRDGSEQDWEMPKHCPSCGSEIRPEKEGDKDLRCPNQRHCPAQI
KERLIFLASRGALDIEGLGEQSAAALTMPEAERPRAALALTRGAAVAVAGEFIYFPEADP
AADVSAEDAESLLPPSALPALPLESGLFDLGEEQLLQVKSWNRKQVTKSDREKLKAQLVA
GGKSDKEAAGLSRQLLRGGEIWSYTPYFAGGDPLAPALAARGKLLLAELEKAKTQPLWRI
LVALSIRHLGPQASRTLAARFGSLSAIASASESELTSVADIGGEIASSIKRWFAVDWHQE
IVSAWEKAGVVMREEGAESTEQTLSGLNVVVSGRVEGYTRDEAKEAVMRAGGKSASSVSK
NTDLLVYGDKAGSKLKKAREMGVTCLPQKYFSQLVAEGIAAALAHSESGNQVGNTQESEP
EIVPPPASSPEKTPLSEPPASASGSDSLF
NT seq 2610 nt   +upstreamnt  +downstreamnt
atggcgagcgaatacgagcaggcattgacgcaggcacaaaaacagtgggaagtgctggca
gaccagattaaccaggcgcgagttctctattatgatcgcgaccgtcccacgctttcagat
gcccaatatgaccagttatttcggcaactcgaagaactagagggacgttttccgcagcta
ataaaccccgattcgcctacccaaaccgtaggggggagtgcgcaaaaaactttttcttcc
gttacccatctagagcggatggcttccttagatgacgtgttcgataccgaagaagtgtct
agttggtatcagcgaatggcgcaggctaccggggaggaaaacccgcaggtaagtgcggaa
gtgaaaattgatggcctagcggttaacctcacctatcggaatgggaagcttgccctggga
gctacccgcggagatggcagcgtaggcgaggacgtgactgccaatattcgcactatcgct
aacgtaccccaaaagctcagcgggaaggtagtacccgagctttgcgaaatccgaggggag
atctattttcctctctccgcttttaaccagttaaatgagcagcgtagcgcccagtgggag
gaatatagcgcagcgaaaaaagccggtaatcttgccgcttggcgcgcggagcggcaaaaa
acaggattgcctagcaaggtggaacccccctttgttaatccccgaaatgccgctgctggt
tccttgcggcaaaaggacgcccgggtaaccgcggctcgcccgttagctttgattgcgcat
ggcatcgggaaagtgcagtggaaagccgctgatttagctgccggtttcaccccgccgacc
agccaattgcagtggtatcaccagctttctcagtgggggctaccggtcagcgaatatact
cgcccgttgcgggggctagataaaatccaagaatttattacccatatcggtaaaatccgt
cccgagattagccatgaaatcgatggggttgtactaaaaatcgatgatctgaaaactcaa
ggggaactgggatttaccgcccgcgccccccgctgggcggttgcctataagttcccgccg
caagaggtccacaccaaactgctggatatccgggtcggggtggggcgtaccggcaggata
actccctacggggttatggaaaaagtgctggtagatgggtctaatgtggagcgcgctacc
ctccataatcccttcgaggtacgccgcaagggcgtaaaaattggggacaccgtggtgctg
cgtaaagcgggggacgtgatccccgagatcgtttgcccggtagtggatttacgggatggc
agcgaacaggattgggaaatgcctaagcactgtccttcttgtggcagcgagattcgcccc
gaaaaagaaggcgataaagatttacgctgccccaaccagcggcattgccccgcacagatt
aaagaacggcttattttcttagcttcgcgtggcgccctcgatattgaagggctgggggaa
cagtcggcggcagcactcaccatgcccgaggccgagcgcccccgggctgcccttgccctc
acgcggggagcagcggtagcagtagcgggggagtttatctatttccccgaggctgacccg
gcggctgacgtttcggccgaggacgcggagtcgctactgcctccgtccgccttaccggcg
cttcccttagaatctgggttatttgatttaggagaggaacagctgctacaggtaaaaagc
tggaaccggaagcaggtaactaaaagcgaccgcgagaagctaaaagcccagttagtagcg
ggcggtaaaagcgataaagaagccgcaggcttgagtcgccagctcctgcgagggggagag
atctggagttacaccccctattttgcaggcggtgacccgctagcacccgccctggccgca
cggggaaagttactactagcggagctagaaaaagcgaagacccagccgctgtggcgcatt
ttagtcgcgctatcgattaggcatctcggtccccaggcctcccggacactagcggcgcgt
tttggttctttgtcggcaatcgctagtgccagtgaaagtgagctcaccagcgtagctgat
attggaggagagattgcctcctccataaagaggtggttcgccgttgactggcaccaagag
attgtgtccgcctgggaaaaagcgggggtggtgatgcgcgaagagggcgccgagagcact
gagcaaaccctatccggactaaacgtagtggtctccggtagggtagagggctatacccgc
gacgaagccaaagaagcagtcatgcgagcgggcggaaaatctgcgtcctcggtttcaaag
aataccgatcttttggtttacggagataaggccggttcaaaactaaagaaagcccgcgaa
atgggggtgacctgcctgccgcaaaagtatttttcgcagctggtagccgagggaatagca
gcagctctggcgcatagcgaatcgggaaaccaggtaggaaacacgcaggaaagcgaaccg
gaaatagtgcccccacctgcgtcctcacccgagaaaactccactttcagagccgccagca
tccgctagtggttccgatagtttgttttag

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