Vibrio cyclitrophicus: FAZ90_04150
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Entry
FAZ90_04150 CDS
T06393
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vcc
Vibrio cyclitrophicus
Pathway
vcc03030
DNA replication
vcc03410
Base excision repair
vcc03420
Nucleotide excision repair
vcc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FAZ90_04150 (ligA)
03410 Base excision repair
FAZ90_04150 (ligA)
03420 Nucleotide excision repair
FAZ90_04150 (ligA)
03430 Mismatch repair
FAZ90_04150 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcc03032
]
FAZ90_04150 (ligA)
03400 DNA repair and recombination proteins [BR:
vcc03400
]
FAZ90_04150 (ligA)
Enzymes [BR:
vcc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FAZ90_04150 (ligA)
DNA replication proteins [BR:
vcc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FAZ90_04150 (ligA)
DNA repair and recombination proteins [BR:
vcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FAZ90_04150 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FAZ90_04150 (ligA)
MMR (mismatch excision repair)
DNA ligase
FAZ90_04150 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FAZ90_04150 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RNA_ligase
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QCI70295
LinkDB
All DBs
Position
1:847685..849697
Genome browser
AA seq
670 aa
AA seq
DB search
MKESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTVDSPS
QRVGGQPLEGFTQVTHEIPMLSLDNAFSDEDLDAFNKRMSDRAPTANLKTFCCEPKLDGL
AVSLLYVNGSLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKA
GFNKLNELALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVQGAELSTSH
YQRFIQLKGWGLPMCPETKQLTSLDDVKAYYQDIMSRRDALAYEIDGVVIKVDDIAAQET
LGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLH
NADEIARLGVKVGDSVIIRRAGDVIPQIVAVVQDRRPDTATDIVFPDTCPVCNSTVERVE
GEAVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKVIEQLVDREMVETPADLFKLSA
GVITVLDRMGPKSAQNVVSALNKAKDTTLARFLYSLGIREVGEATAMNLAQHFKTLDLVQ
TATHEQLVEVSDIGDIVASHITSFFSQEKNRAVIEQLLELGVNWPAIEAVADDQDLPLEG
KVVVLTGSLSQLGRSEAKAALQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIR
TEEDLIALIS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaatcgattcaagttaccttagagcagttaagagaaactctgcactatcatgcc
gttcgttattacgtagaagatagccctgagatccctgatgtcgaatacgatcgcttaatg
cagcagttgctcaagattgaggaagagaacccggagctagtgacggtagattctccgagc
cagcgtgttggtggccagcctttagagggcttcacgcaagtgactcatgagataccaatg
ctttctttggacaatgctttctctgatgaagatttggatgcgtttaataagcgtatgtct
gatagagcgccaacggcaaacctcaagactttctgttgtgagcctaaacttgatggttta
gcggtgagcttactctatgtaaatggctctttagttcaagctgcaactcgtggtgatggc
gcaacaggtgaaaacattaccgaaaacgtgcgtacgatcagttctattccgcttaagttg
caaggtgaaggttggcctgagcgcattgaagttcgcggtgaagtgtttatgccaaaagca
ggcttcaacaaactgaatgaactggcgttgaaaaaaggcgagaaagtctttgttaaccct
cgtaatgccgccgcaggtagtctacgtcagcttgattctcgtattacggcaaagcgacca
ttagctttttacgcgtacagtgtcggtgttgtgcaaggtgctgagctctctactagtcac
taccaacgttttatacagcttaaaggttggggtttaccaatgtgcccagagaccaagcag
ctaacttcactcgatgatgtgaaagcgtattaccaagatattatgtctcgtcgtgatgct
ctggcctatgagattgatggggtggtgattaaggtcgatgacattgccgcacaagaaact
ttaggctttgttgcacgagcacctcgctgggcaattgcttacaagttcccagctcaagaa
gagattactttacttaacgatgttgagtttcaggttggtcgtactggcgcgattacgcca
gtggctaaactagaacctatctttgttggtggtgtgacggtaagtaatgccacgcttcac
aatgctgatgagattgctcgtttaggcgtgaaggtgggcgacagcgttatcattcgccgt
gctggtgacgttattccacaaatagtggctgttgtacaagaccgtcgtcctgatactgct
acagacattgttttccctgatacttgtcctgtatgtaactctactgttgagcgcgtagaa
ggtgaggcggtagcgcgttgtactggcggtttggtgtgtcaggcacagcgtaaggaagcg
cttaagcactttgtctctagaaaagcacttgatgttgatggtcttggtgtaaaagtaatt
gagcagcttgtggatcgtgaaatggtagaaactccagctgacttatttaagctcagtgcg
ggtgtgattacggtacttgatagaatggggcctaagtcagctcagaacgtggtgagtgct
cttaacaaagctaaagacacaacactggcacgtttcctttactcactaggtattcgtgaa
gtgggcgaagcgacagcaatgaacttagcgcaacacttcaagactctcgatttagttcaa
acagcaacacatgaacaattggttgaagtgtcagatattggcgacattgttgctagtcat
atcacaagcttcttctcacaagagaaaaatagggccgtaatcgagcagttgctagagctc
ggtgttaactggcctgcaattgaagctgttgcggatgaccaagatctaccattagaaggt
aaagtcgttgtgttaacaggttcattgtcccaattaggtcgaagtgaagctaaagctgcg
ttacaagcattaggtgcgaaagtgacgggtagcgtatcgaagaaaaccgacatattattt
gctggcgaagcggcaggttctaaattaaccaaagcacaagatttaggtatcgaaataaga
acagaagaagatctaatagccctcatttcgtaa
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integrated database retrieval system
