Vibrio cholerae O1 El Tor FJ147: IR04_10195
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Entry
IR04_10195 CDS
T03827
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Pathway
vcf03030
DNA replication
vcf03410
Base excision repair
vcf03420
Nucleotide excision repair
vcf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IR04_10195 (ligA)
03410 Base excision repair
IR04_10195 (ligA)
03420 Nucleotide excision repair
IR04_10195 (ligA)
03430 Mismatch repair
IR04_10195 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcf03032
]
IR04_10195 (ligA)
03400 DNA repair and recombination proteins [BR:
vcf03400
]
IR04_10195 (ligA)
Enzymes [BR:
vcf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IR04_10195 (ligA)
DNA replication proteins [BR:
vcf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IR04_10195 (ligA)
DNA repair and recombination proteins [BR:
vcf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IR04_10195 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IR04_10195 (ligA)
MMR (mismatch excision repair)
DNA ligase
IR04_10195 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IR04_10195 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AJZ99503
LinkDB
All DBs
Position
I:1118525..1120534
Genome browser
AA seq
669 aa
AA seq
DB search
MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSL
RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLA
VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG
FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY
QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL
GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN
ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG
EAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRAG
ELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQ
ASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGK
IVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFD
EQALIEFLK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgtcgcgcaacgattaacagaattaagaaaaaccttgcatgagcatggtgtc
cgctattacgtagaagatgcccccagcattccggatgcagaatacgatcgcttaatgcgc
gagctgctggaattggaagcggctcacccggaattgatgagctcggactcgcccagttta
cgagtcggaggacgtccgcttgatgcttttgaatctgtcgtgcatgaaattccgatgtta
tcgctcgataacgcctttgatgatggtgaattagaaagcttttatcgtcgtatgacggat
cggatcccggcggtacagcatagtgccttttgttgtgagccgaaactggatggcttggcg
gtcagtttactatacgaaaatggtgttctgacccgcgcggcgactcgtggtgatggtacg
accggcgaaaacatcacagaaaatgtacgtaccattaaatcaatccctttacgcctgcaa
ggcgcagattttccaactcgccttgaagtgcgcggtgaagtgtttatgcctaaagcgggg
tttgaagcacttaacgcacgagcgcttaaaaaaggtgaaaagcagtttgtgaaccctcgt
aatgcagcggcggggagcctacgtcaactcgactccaaaattaccgcccaacgtccactg
gctttttatgcttacagtgttggtgttattgaaggcggagagttagcgaccagccactat
caacgatttttacaactaaagggctgggggctgccgatttgtccagaaaccaaactggta
acttctctcgccgaagtcaaagctttttatcaagacattttgcaacgtcgccagtctttg
gcttatgagattgatggcgtcgtcattaaagttgacgatatccagttgcaagagcgattg
gggttcgtggctagagcgccgcgctgggcgattgcctataaatttcctgcgcaggaagag
cttactttgctcaatgatgttgaatttcaggtaggtcgtactggtgcgattaccccggtt
gctaagttggagcctgtgtttgtcggtggtgttacggtaagtaatgccacattacataat
gccgatgagattgagcgtttgggagtgatggtcggagatacggtggtgatccgccgtgct
ggggatgtcatcccacaaatcgtctctgtggtattagagcgacgccctgagaatgcaaaa
tctattgtatttcctactcgttgcccagtttgtcaatcggatgttgaacgggttgaagga
gaagcggttgctcgatgttccggtggactgatttgccaagctcagcgcaaagaggcattg
aagcattttgtttctcgcaaggccatggatgtagaaggcttgggcgataaagtgattgag
caactggttgacagagaaatggtgagtacacctgctgatttattccggttaagagcggga
gagctcacgattttggagcgaatgggccccaaatcggcgcagaatgtgattgatgctctc
aataaagcgaagcaaaccacattacctaagtttttatatgcactgggtattcgtgaagtc
ggcgaggctaccgcactcaacttggctcagcactttttaagtttggaagcgattcaacaa
gcgagtttagaacaatttatcgaagttcccgatgtcggagtggttgttgcaagccattta
caggccttctttgcgcaagaccgtaaccaacaagtgatcaatgaattgctagaacaaggc
atcacatggccagcgctaacggctgcgcccgtggcggtagactctgctctagcgggcaaa
attgttgtgttaaccggcagttttactcaattgtctcgtaatgatgcgaaagccgcacta
caagctttaggtgctaaggtgactgggagcgtatcaaaaaatactgatatggtttttgca
ggagaagcagcgggctctaagctagccaaagcgaccgagttgggtatccaagttttcgat
gagcaagcattaatcgaatttttgaaataa
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