Vibrio cholerae O1 LMA3984-4: VCLMA_A0829 Help Entry VCLMA_A0829       CDS       T01871                                  Name (GenBank) DNA ligase   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism vcl  Vibrio cholerae O1 LMA3984-4 Pathway vcl03030   DNA replication vcl03410   Base excision repair vcl03420   Nucleotide excision repair vcl03430   Mismatch repair Brite KEGG Orthology (KO) [BR:vcl00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     VCLMA_A0829    03410 Base excision repair     VCLMA_A0829    03420 Nucleotide excision repair     VCLMA_A0829    03430 Mismatch repair     VCLMA_A0829  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:vcl03032]     VCLMA_A0829    03400 DNA repair and recombination proteins [BR:vcl03400]     VCLMA_A0829 Enzymes [BR:vcl01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      VCLMA_A0829 DNA replication proteins [BR:vcl03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      VCLMA_A0829 DNA repair and recombination proteins [BR:vcl03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      VCLMA_A0829    NER (nucleotide excision repair)     GGR (global genome repair) factors      VCLMA_A0829    MMR (mismatch excision repair)     DNA ligase      VCLMA_A0829   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       VCLMA_A0829 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH DZR_2 Motif Other DBs NCBI-ProteinID:  AEA78100 LinkDB All DBs Position I:938139..940148 Genome browser AA seq 669 aa AA seqDB search MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSL RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIQAVQHSAFCCEPKLDGLA VSLLYENGVLTRAATRGDGMTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVFMPKAG FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQFLAYEIDGVVIKVDDIQLQERL GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG EAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRAG ELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQ ASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGK IVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFD EQALIEFLK NT seq 2010 nt NT seq  +upstreamnt  +downstreamnt atgtcagatgtcgcgcaacgattaacagaattaagaaaaaccttgcatgagcatggtgtc cgctattacgtagaagatgcccccagcattccggatgcagaatacgatcgcttaatgcgc gagctgctggaattggaagcggctcacccggaattgatgagctcggactcgcccagttta cgagtcggaggacgtccgctggatgcttttgaatctgtcgtgcatgaaattccgatgtta tcgctcgataacgcctttgatgatggtgaattagaaagcttttatcgccgtatgacggat cggatccaggcggtacagcatagtgccttttgttgtgagccgaaactggatggcttggcg gtcagtttactatacgaaaatggtgttctgacccgcgcggcgactcgtggtgatggtatg accggcgaaaacatcacggaaaatgtacgtaccattaaagcaatccctttacgtctgcaa ggcgcagattttccaactcgccttgaagtgcgcggtgaagtgtttatgcctaaagcgggg tttgaagcacttaacgcacgagcattgaaaaaaggtgaaaagcagtttgttaaccctcgt aatgcggcggcgggaagcctacgtcaactcgactccaaaattaccgcccaacgtccactg gctttttacgcttatagtgttggtgttattgaaggcggagagttagcgaccagccactat caacgatttttgcaactaaagggctgggggctgccgatttgtcctgaaaccaaactggta acttctctcgccgaagtcaaagctttttatcaagacattttgcaacgtcgtcagtttttg gcttatgagattgatggcgtcgtcattaaagttgacgatatccagttgcaggagcgattg gggttcgttgctagagcgccgcgctgggcgattgcctataaatttcctgcgcaggaagag cttactttgctcaatgatgttgaatttcaggtaggtcgtactggcgcgattaccccagtt gctaagttggagcctgtttttgtcggtggtgttacggtaagtaatgccacattacataat gccgatgagattgagcgtttgggagtgatggtcggagatacggtggtgatccgccgtgct ggggatgtcatcccacaaatcgtctctgtggtattagagcgacgccctgagaatgcaaaa tctattgtatttcctactcgttgcccagtttgtcaatcggatgttgaacgggttgaagga gaagcggttgctcgatgttccggtggactgatttgccaagctcagcgcaaagaggcattg aagcattttgtttctcgcaaggccatggatgtagaaggcttgggcgataaagtgattgag caactggttgaccgagaaatggtgagtacacctgctgatttattccggttaagagcggga gagctcacgattttggagcgaatgggccccaaatcggcgcagaatgtgattgatgctctc aataaagcgaagcaaaccacattacctaagtttttatatgcactgggtattcgtgaagtc ggcgaggctaccgcactcaacttggctcagcactttttaagtttggaagcgattcaacaa gcgagtttagaacaatttatcgaagttcccgatgtcggagtggttgttgcaagccattta caggccttctttgcgcaagaccgtaaccaacaagtgatcaatgaattgctagaacaaggc atcacatggccggcgctaacggctgcgcccgtggcggtagactctgctctagcgggcaaa attgttgtgttaaccggcagttttactcaattgtctcgtaatgatgcgaaagccgcacta caagctttaggtgctaaggtgacggggagcgtatcaaaaaatactgatattgtttttgca ggagaagcagcgggctctaagctagccaaagcgaccgagttgggtatccaagttttcgat gagcaagcattaatcgaatttttgaaataa

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