KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_83674
Entry
VOLCADRAFT_83674  CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K12608  CCR4-NOT complex subunit CAF16
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VOLCADRAFT_83674
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcn03019]
    VOLCADRAFT_83674
Messenger RNA biogenesis [BR:vcn03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     VOLCADRAFT_83674
SSDB
Motif
Pfam: ABC_tran AAA_21 TsaE AAA_29 AAA_28 VapE-like_dom nSTAND3 AAA_23 ORC-CDC6-like AAA_25 RsgA_GTPase AAA_30 SRP54 NACHT Arf AAA_15 AAA_24
Other DBs
NCBI-GeneID: 9619824
NCBI-ProteinID: XP_002956568
JGI: 83674
UniProt: D8UD56
LinkDB
Position
Unknown
AA seq 322 aa
MTQQPEPSTSAAATAPGSIEVRHLSFAYPGLDGRPIPGIPPLLKNLSFSLAPGTTCLLLG
ANGAGKTTFLKILAGKHMVSEESVRVLGRPPFHDTALTVCGDLSYIGGNWQRDIAFAGTS
VPLTGDFPASYMIDSIPGVDPERKARLIKARRDVLDIDPTWRMHTVSEGQRRRVQICVGL
LKPFKVLLLDEITVDLDVLGRADLMRFLKEECESRGATIIYATHIFDGLEFWPSHIAYLA
NGQLRLLPARDVPELAQGRLLSLVHRMLLEDRNAQLKARGPRPVEWDPTREGEVGNFSYA
FNNGWVPGTLSSSLSSNAVMRG
NT seq 969 nt   +upstreamnt  +downstreamnt
atgacacagcagcctgagccaagcaccagcgccgcggcgacagctcctggcagcatcgag
gttcgccatctgagctttgcttacccaggactagatggtcgccccatcccgggaatcccg
ccacttttgaagaacctttccttctcgctcgctcccggcaccacttgcttgttgctggga
gccaacggcgccggcaaaacaacttttttgaaaatcttggcgggaaaacacatggtgtct
gaggagtcagtccgggtactggggcggccgcccttccacgataccgctctcaccgtctgc
ggtgacctgtcgtatattggcggcaactggcagcgcgacattgcgtttgcaggcactagt
gtgccgctcacaggcgacttcccagcgtcgtacatgattgactccatcccgggcgtggat
ccagagcggaaggcccgtctgatcaaggcgcgtcgggatgtgctggacatcgaccccacc
tggcggatgcacacggtttcggagggccagcggcgtcgcgtgcaaatctgcgtgggattg
ctgaagccctttaaggtgcttctgctggacgagattacggtggatttagacgtgctggga
cgagctgacctgatgcgctttcttaaggaggaatgtgagagtcgcggcgccaccatcatc
tacgccacccacatttttgatgggctggagttctggccctcccacatagcctacctcgca
aacggtcagctcaggctcctccctgcacgtgacgtaccagagctggctcagggccggctg
ctgtcgctcgtgcaccggatgctgctggaggaccggaacgcgcagctcaaggcacggggt
ccgcggccggtggaatgggatcccacgcgcgagggcgaggtgggcaatttctcctacgcc
ttcaacaacggctgggtgccgggcacgttgtcttcctctctgagcagtaatgcagtcatg
cgggggtga

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